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[FIX] Add small bug fixes we've accumulated#381

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DESm1th merged 9 commits intoTIGRLab:mainfrom
DESm1th:bug_fixes
Apr 29, 2026
Merged

[FIX] Add small bug fixes we've accumulated#381
DESm1th merged 9 commits intoTIGRLab:mainfrom
DESm1th:bug_fixes

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@DESm1th DESm1th commented Apr 29, 2026

This PR includes a variety of bug fixes we've been running prod for a while that got overlooked in past merges to main.

DESm1th added 9 commits April 29, 2026 17:40
White space in certain file names was breaking scans.csv parsing
so enforce that it must be stripped out.
Some studies were consistently having their QC jobs time out.
Make it easier to modify it just for studies with crazy large scans
- 'refresh' flag was improperly propagating
- Wrong source dir was used when 'refresh' was given
@DESm1th DESm1th requested a review from a team as a code owner April 29, 2026 22:05
@DESm1th DESm1th requested review from kimjetwav and slimnsour April 29, 2026 22:05
@DESm1th DESm1th merged commit f8d144e into TIGRLab:main Apr 29, 2026
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@DESm1th DESm1th deleted the bug_fixes branch April 29, 2026 22:09
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