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ToobaZahra/README.md

Hi, I'm Tooba!

Bioinformatics Pipeline Developer | MS Bioinformatics @ COMSATS | Open to Freelance


About Me

Β  I don't stop until it's done β€” deadlines don't scare me, they motivate me πŸ’ͺ
  I turn raw sequencing data into biological insights 🧬
Β  Building reproducible NGS pipelines with Nextflow + Docker β€” because science should be repeatable πŸ”¬
Β  Quick learner β€” if I don't know it today, I'll build it tomorrow πŸš€
Β  Open to freelance bioinformatics projects πŸ’Ό
  When I'm not coding, I'm designing, journaling, or planning my next project ✨

🧬 Projects

Project Description Tools
RNA-seq Nextflow + Docker Pipeline End-to-end RNA-seq pipeline: FastQC β†’ Trimmomatic β†’ STAR β†’ featureCounts β†’ MultiQC Nextflow, Docker, STAR
Metagenomics Nextflow + Docker Pipeline Metagenomics pipeline with taxonomic classification via Kraken2 + Bracken Nextflow, Docker, Kraken2
RNA-Seq C. elegans Analysis Sex-specific gene expression analysis β€” 76-84% alignment rate, DESeq2 R, DESeq2, STAR

πŸ’» Tech Stack

Python R Docker Nextflow Flask MySQL HTML5 CSS3 NumPy Pandas

πŸ› οΈ Tools

VS Code GitHub Codespaces Jupyter Adobe Illustrator Canva Figma

🀝 Let's Connect

LinkedIn Dribbble Hashnode

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  1. RNA-Seq-C-elegans-Analysis RNA-Seq-C-elegans-Analysis Public

    End-to-end RNA-Seq analysis pipeline identifying sex-specific gene expression in C. elegans

    Jupyter Notebook 1

  2. rnaseq-nextflow-docker rnaseq-nextflow-docker Public

    Nextflow

  3. metagenomics-nextflow-docker metagenomics-nextflow-docker Public

    Nextflow

  4. cancer-subtype-ml cancer-subtype-ml Public

    Python

  5. hcc-tgfb-multiomics-thesis hcc-tgfb-multiomics-thesis Public

    MS thesis: Multi-omics analysis of TGF-Ξ² pathway dysregulation in hepatocellular carcinoma using TCGA-LIHC and GEO cohorts.

    R