Update cleanup flow and GitHub workflows for npm release reliability

.github/actions/npm-auth-preflight/action.yml

@@ -2,6 +2,9 @@ name: NPM Auth Preflight
 description: Validate npm authentication and report package access
 
 inputs:
+  npm-token:
+    description: npm authentication token
+    required: true
   registry-url:
     description: npm registry URL
     required: false
@@ -19,7 +22,7 @@ runs:
     - name: Preflight npm auth
       shell: bash
       env:
-        NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }}
+        NODE_AUTH_TOKEN: ${{ inputs.npm-token }}
         REGISTRY_URL: ${{ inputs.registry-url }}
         PACKAGE_DIR: ${{ inputs.package-dir }}
         PACKAGE_NAME: ${{ inputs.package-name }}

.github/actions/npm-publish-package/action.yml

@@ -2,6 +2,9 @@ name: NPM Publish Package
 description: Publish a package to npm with retry and verification logic
 
 inputs:
+  npm-token:
+    description: npm authentication token
+    required: true
   registry-url:
     description: npm registry URL
     required: false
@@ -24,7 +27,7 @@ runs:
     - name: Publish to npm
       shell: bash
       env:
-        NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }}
+        NODE_AUTH_TOKEN: ${{ inputs.npm-token }}
         REGISTRY_URL: ${{ inputs.registry-url }}
         PACKAGE_DIR: ${{ inputs.package-dir }}
         VERIFY_ATTEMPTS: ${{ inputs.verify-attempts }}

.github/workflows/release-cli.yml

@@ -251,6 +251,7 @@ jobs:
       - name: Publish CLI platform sub-packages
         uses: ./.github/actions/npm-publish-package
         with:
+          npm-token: ${{ secrets.NPM_TOKEN }}
           registry-url: ${{ env.NPM_REGISTRY_URL }}
           package-dir: cli/npm
 
@@ -267,13 +268,15 @@ jobs:
           registry-url: https://registry.npmjs.org/
       - uses: ./.github/actions/npm-auth-preflight
         with:
+          npm-token: ${{ secrets.NPM_TOKEN }}
           registry-url: ${{ env.NPM_REGISTRY_URL }}
           package-dir: cli
           package-name: "@truenine/memory-sync-cli"
       - name: Build
         run: pnpm -F @truenine/memory-sync-cli run build
       - uses: ./.github/actions/npm-publish-package
         with:
+          npm-token: ${{ secrets.NPM_TOKEN }}
           registry-url: ${{ env.NPM_REGISTRY_URL }}
           package-dir: cli
 
@@ -292,13 +295,15 @@ jobs:
           registry-url: https://registry.npmjs.org/
       - uses: ./.github/actions/npm-auth-preflight
         with:
+          npm-token: ${{ secrets.NPM_TOKEN }}
           registry-url: ${{ env.NPM_REGISTRY_URL }}
           package-dir: mcp
           package-name: "@truenine/memory-sync-mcp"
       - name: Build
         run: pnpm exec turbo run build --filter=@truenine/memory-sync-mcp
       - uses: ./.github/actions/npm-publish-package
         with:
+          npm-token: ${{ secrets.NPM_TOKEN }}
           registry-url: ${{ env.NPM_REGISTRY_URL }}
           package-dir: mcp
 

Cargo.toml

@@ -10,7 +10,7 @@ members = [
 ]
 
 [workspace.package]
-version = "2026.10402.116"
+version = "2026.10403.117"
 edition = "2024"
 rust-version = "1.88"
 license = "AGPL-3.0-only"

cli/npm/darwin-arm64/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@truenine/memory-sync-cli-darwin-arm64",
-  "version": "2026.10402.116",
+  "version": "2026.10403.117",
   "os": [
     "darwin"
   ],

cli/npm/darwin-x64/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@truenine/memory-sync-cli-darwin-x64",
-  "version": "2026.10402.116",
+  "version": "2026.10403.117",
   "os": [
     "darwin"
   ],

cli/npm/linux-arm64-gnu/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@truenine/memory-sync-cli-linux-arm64-gnu",
-  "version": "2026.10402.116",
+  "version": "2026.10403.117",
   "os": [
     "linux"
   ],

cli/npm/linux-x64-gnu/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@truenine/memory-sync-cli-linux-x64-gnu",
-  "version": "2026.10402.116",
+  "version": "2026.10403.117",
   "os": [
     "linux"
   ],

cli/npm/win32-x64-msvc/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@truenine/memory-sync-cli-win32-x64-msvc",
-  "version": "2026.10402.116",
+  "version": "2026.10403.117",
   "os": [
     "win32"
   ],

cli/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@truenine/memory-sync-cli",
   "type": "module",
-  "version": "2026.10402.116",
+  "version": "2026.10403.117",
   "description": "TrueNine Memory Synchronization CLI shell",
   "author": "TrueNine",
   "license": "AGPL-3.0-only",

cli/src/PluginPipeline.ts

@@ -8,11 +8,22 @@ import type {
   PipelineConfig,
   PluginOptions
 } from '@truenine/memory-sync-sdk'
-import type {Command, CommandContext, CommandResult} from '@/commands/Command'
+import type {
+  Command,
+  CommandContext,
+  CommandResult
+} from '@/commands/Command'
 import type {ParsedCliArgs} from '@/pipeline/CliArgumentParser'
-import {createLogger, discoverOutputRuntimeTargets, setGlobalLogLevel} from '@truenine/memory-sync-sdk'
-import {JsonOutputCommand} from '@/commands/JsonOutputCommand'
-import {extractUserArgs, parseArgs, resolveCommand} from '@/pipeline/CliArgumentParser'
+import {
+  createLogger,
+  discoverOutputRuntimeTargets,
+  setGlobalLogLevel
+} from '@truenine/memory-sync-sdk'
+import {
+  extractUserArgs,
+  parseArgs,
+  resolveCommand
+} from '@/pipeline/CliArgumentParser'
 
 export class PluginPipeline {
   private readonly logger: ILogger
@@ -34,44 +45,60 @@ export class PluginPipeline {
   }
 
   async run(config: PipelineConfig): Promise<CommandResult> {
-    const {context, outputPlugins, userConfigOptions} = config
+    const {context, outputPlugins, userConfigOptions, executionPlan} = config
     this.registerOutputPlugins([...outputPlugins])
-    let command: Command = resolveCommand(this.args)
-
-    if (!this.args.jsonFlag) return command.execute(this.createCommandContext(context, userConfigOptions))
-
-    setGlobalLogLevel('silent')
-    if (!new Set(['config-show', 'plugins']).has(command.name)) command = new JsonOutputCommand(command)
-    return command.execute(this.createCommandContext(context, userConfigOptions))
+    const command: Command = resolveCommand(this.args)
+    return command.execute(
+      this.createCommandContext(context, userConfigOptions, executionPlan)
+    )
   }
 
-  private createCommandContext(ctx: OutputCollectedContext, userConfigOptions: Required<PluginOptions>): CommandContext {
+  private createCommandContext(
+    ctx: OutputCollectedContext,
+    userConfigOptions: Required<PluginOptions>,
+    executionPlan: PipelineConfig['executionPlan']
+  ): CommandContext {
     return {
       logger: this.logger,
       outputPlugins: this.outputPlugins,
       collectedOutputContext: ctx,
       userConfigOptions,
-      createCleanContext: dryRun => this.createCleanContext(ctx, userConfigOptions, dryRun),
-      createWriteContext: dryRun => this.createWriteContext(ctx, userConfigOptions, dryRun)
+      executionPlan,
+      createCleanContext: dryRun =>
+        this.createCleanContext(ctx, userConfigOptions, executionPlan, dryRun),
+      createWriteContext: dryRun =>
+        this.createWriteContext(ctx, userConfigOptions, executionPlan, dryRun)
     }
   }
 
-  private createCleanContext(ctx: OutputCollectedContext, userConfigOptions: Required<PluginOptions>, dryRun: boolean): OutputCleanContext {
+  private createCleanContext(
+    ctx: OutputCollectedContext,
+    userConfigOptions: Required<PluginOptions>,
+    executionPlan: PipelineConfig['executionPlan'],
+    dryRun: boolean
+  ): OutputCleanContext {
     return {
       logger: this.logger,
       collectedOutputContext: ctx,
       pluginOptions: userConfigOptions,
       runtimeTargets: this.getRuntimeTargets(),
+      executionPlan,
       dryRun
     }
   }
 
-  private createWriteContext(ctx: OutputCollectedContext, userConfigOptions: Required<PluginOptions>, dryRun: boolean): OutputWriteContext {
+  private createWriteContext(
+    ctx: OutputCollectedContext,
+    userConfigOptions: Required<PluginOptions>,
+    executionPlan: PipelineConfig['executionPlan'],
+    dryRun: boolean
+  ): OutputWriteContext {
     return {
       logger: this.logger,
       collectedOutputContext: ctx,
       pluginOptions: userConfigOptions,
       runtimeTargets: this.getRuntimeTargets(),
+      executionPlan,
       dryRun,
       registeredPluginNames: this.outputPlugins.map(plugin => plugin.name)
     }

cli/src/cli-runtime.test.ts

@@ -1,11 +1,24 @@
 import {afterEach, describe, expect, it, vi} from 'vitest'
 
-const {createDefaultPluginConfigMock, pipelineRunMock, pluginPipelineCtorMock} = vi.hoisted(() => ({
+const {
+  createDefaultPluginConfigMock,
+  pipelineRunMock,
+  pluginPipelineCtorMock
+} = vi.hoisted(() => ({
   createDefaultPluginConfigMock: vi.fn(),
   pipelineRunMock: vi.fn(),
   pluginPipelineCtorMock: vi.fn()
 }))
 
+function createEmptyProjectsBySeries() {
+  return {
+    app: [],
+    ext: [],
+    arch: [],
+    softwares: []
+  }
+}
+
 vi.mock('./plugin.config', () => ({
   createDefaultPluginConfig: createDefaultPluginConfigMock
 }))
@@ -32,20 +45,43 @@ describe('cli runtime lightweight commands', () => {
     expect(pipelineRunMock).not.toHaveBeenCalled()
   })
 
-  it('emits JSON for --version --json without loading plugin config', async () => {
+  it('passes the real cwd into the standard plugin config path', async () => {
     const {runCli} = await import('./cli-runtime')
-    const writeSpy = vi.spyOn(process.stdout, 'write').mockImplementation(() => true)
-    try {
-      const exitCode = await runCli(['node', 'tnmsc', '--version', '--json'])
-      expect(exitCode).toBe(0)
-      expect(createDefaultPluginConfigMock).not.toHaveBeenCalled()
-      expect(pluginPipelineCtorMock).not.toHaveBeenCalled()
-      expect(pipelineRunMock).not.toHaveBeenCalled()
-      const payload = JSON.parse(String(writeSpy.mock.calls[0]?.[0])) as {readonly success: boolean, readonly message?: string}
-      expect(payload.success).toBe(true)
-      expect(payload.message).toBe('Version displayed')
-    } finally {
-      writeSpy.mockRestore()
-    }
+    createDefaultPluginConfigMock.mockResolvedValue({
+      context: {
+        workspace: {
+          directory: {
+            pathKind: 'absolute',
+            path: process.cwd(),
+            getDirectoryName: () => 'cwd'
+          },
+          projects: []
+        }
+      },
+      outputPlugins: [],
+      userConfigOptions: {},
+      executionPlan: {
+        scope: 'workspace',
+        cwd: process.cwd(),
+        workspaceDir: process.cwd(),
+        projectsBySeries: createEmptyProjectsBySeries()
+      }
+    })
+    pipelineRunMock.mockResolvedValue({
+      success: true,
+      filesAffected: 0,
+      dirsAffected: 0
+    })
+
+    const exitCode = await runCli(['node', 'tnmsc'])
+
+    expect(exitCode).toBe(0)
+    expect(createDefaultPluginConfigMock).toHaveBeenCalledWith(
+      ['node', 'tnmsc'],
+      void 0,
+      process.cwd()
+    )
+    expect(pluginPipelineCtorMock).toHaveBeenCalledWith('node', 'tnmsc')
+    expect(pipelineRunMock).toHaveBeenCalledTimes(1)
   })
 })