Add dependency graph visualizer and editor scaffold

.github/workflows/Benchmarks.yml

@@ -1,13 +1,13 @@
 name: Benchmarks
 on:
   pull_request_target:
-    branches: [main]
+    branches: [ main ]
   workflow_dispatch:
 permissions:
   pull-requests: write
 jobs:
   bench:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ github.event_name }}
     runs-on: ${{ matrix.os }}
     timeout-minutes: 60
     strategy:
@@ -17,8 +17,6 @@ jobs:
           - "1"
         os:
           - ubuntu-latest
-        arch:
-          - x64
     steps:
       - uses: MilesCranmer/AirspeedVelocity.jl@action-v1
         with:

.github/workflows/CI.yml

@@ -13,10 +13,11 @@ concurrency:
   cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
 jobs:
   test:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ github.event_name }}
     runs-on: ${{ matrix.os }}
     timeout-minutes: 60
-    permissions: # needed to allow julia-actions/cache to proactively delete old caches that it has created
+    permissions:
+      # needed to allow julia-actions/cache to proactively delete old caches that it has created
       actions: write
       contents: read
     strategy:
@@ -29,14 +30,11 @@ jobs:
           - ubuntu-latest
           - macOS-latest
           - windows-latest
-        arch:
-          - x64
     steps:
       - uses: actions/checkout@v6
       - uses: julia-actions/setup-julia@v3
         with:
           version: ${{ matrix.version }}
-          arch: ${{ matrix.arch }}
       - uses: julia-actions/cache@v3
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1

.github/workflows/Integration.yml

@@ -13,10 +13,11 @@ concurrency:
   cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
 jobs:
   test:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ github.event_name }}
     runs-on: ${{ matrix.os }}
     timeout-minutes: 60
-    permissions: # needed to allow julia-actions/cache to proactively delete old caches that it has created
+    permissions:
+      # needed to allow julia-actions/cache to proactively delete old caches that it has created
       actions: write
       contents: read
     strategy:
@@ -26,22 +27,14 @@ jobs:
           - "1"
         os:
           - ubuntu-latest
-        arch:
-          - x64
         package:
           - { user: PalmStudio, repo: XPalm.jl, branch: main, default: main }
-          - {
-              user: VEZY,
-              repo: PlantBioPhysics.jl,
-              branch: master,
-              default: master,
-            }
+          - { user: VEZY, repo: PlantBioPhysics.jl, branch: master, default: master }
     steps:
       - uses: actions/checkout@v6
       - uses: julia-actions/setup-julia@v3
         with:
           version: ${{ matrix.version }}
-          arch: ${{ matrix.arch }}
       - uses: julia-actions/julia-buildpkg@v1
       - name: Clone Downstream
         uses: actions/checkout@v6

.gitignore

@@ -6,4 +6,6 @@
 docs/Manifest.toml
 test/Manifest.toml
 docs/build/
-benchmark/Manifest.toml
+benchmark/Manifest.toml
+frontend/node_modules/
+frontend/dist/

docs/src/working_with_data/inputs.md

@@ -64,7 +64,7 @@ outputs = run!(
 )
 ```
 
-In multiscale runs, type promotion is used by [`GraphSimulation`](@ref) during status template creation, `RefVector` creation, output preallocation, and initialization from MTG node attributes.
+In multiscale runs, type promotion is used by `GraphSimulation` during status template creation, `RefVector` creation, output preallocation, and initialization from MTG node attributes.
 
 
 ## Special considerations for new input types

frontend/.vite/deps/_metadata.json

@@ -0,0 +1,8 @@
+{
+  "hash": "9cb674f6",
+  "configHash": "2b83bb6c",
+  "lockfileHash": "dfbd2d0d",
+  "browserHash": "d060dbeb",
+  "optimized": {},
+  "chunks": {}
+}

frontend/.vite/deps/package.json

@@ -0,0 +1,3 @@
+{
+  "type": "module"
+}

frontend/README.md

@@ -0,0 +1,24 @@
+# PlantSimEngine Dependency Graph Viewer
+
+This is the React Flow frontend for the PlantSimEngine dependency graph viewer.
+It consumes the JSON emitted by `PlantSimEngine.graph_view_json`.
+
+## Development
+
+```sh
+npm install
+npm run dev
+```
+
+The app falls back to a small sample graph when no embedded
+`<script id="pse-graph-data" type="application/json">` payload is present.
+
+## Build
+
+```sh
+npm run build
+```
+
+The Julia package does not require Node, npm, or Bun for the standalone HTML
+export path. JavaScript tooling is only needed when developing or bundling this
+frontend.

frontend/index.html

@@ -0,0 +1,12 @@
+<!doctype html>
+<html lang="en">
+  <head>
+    <meta charset="UTF-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+    <title>PlantSimEngine Dependency Graph</title>
+  </head>
+  <body>
+    <div id="root"></div>
+    <script type="module" src="/src/main.tsx"></script>
+  </body>
+</html>