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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1.2k 265

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 918 183

  3. MicrobiotaProcess MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    R 191 37

  4. ChIPseeker ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    R 250 78

  5. aplot aplot Public

    Decorate a plot with associated information

    R 127 17

  6. aisdk aisdk Public

    A production-grade framework for building AI-powered applications in R.

    R 5

Repositories

Showing 10 of 120 repositories
  • biomedical-knowledge-mining-book Public

    📚 Biomedical knowledge mining using GOSemSim and clusterProfiler

    YuLab-SMU/biomedical-knowledge-mining-book’s past year of commit activity
    TeX 87 30 22 0 Updated Feb 25, 2026
  • clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler’s past year of commit activity
    R 1,172 265 362 0 Updated Feb 25, 2026
  • treedata-book-2ed Public

    📖 Data Integration, Manipulation and Visualization of Phylogenetic Trees

    YuLab-SMU/treedata-book-2ed’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 22, 2026
  • DOSE Public

    😷 Disease Ontology Semantic and Enrichment analysis

    YuLab-SMU/DOSE’s past year of commit activity
    R 125 34 22 0 Updated Feb 22, 2026
  • scholar Public Forked from jkeirstead/scholar

    Analyse citation data from Google Scholar

    YuLab-SMU/scholar’s past year of commit activity
    R 49 83 3 0 Updated Feb 21, 2026
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog’s past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Feb 20, 2026
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io’s past year of commit activity
    HTML 14 5 0 0 Updated Feb 19, 2026
  • ivolcano Public

    Interactive Volcano Plot

    YuLab-SMU/ivolcano’s past year of commit activity
    R 7 1 0 0 Updated Feb 15, 2026
  • fanyi Public

    Translate Words or Sentences via Online Translators

    YuLab-SMU/fanyi’s past year of commit activity
    R 58 8 9 0 Updated Feb 14, 2026
  • sclet Public

    A Lightweight Toolkit for Single-Cell Data Analysis

    YuLab-SMU/sclet’s past year of commit activity
    R 8 7 0 1 Updated Feb 12, 2026