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Adding BGS filter to prepare_sim #212

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Merged
lgarrison merged 9 commits into from
Jul 6, 2026
+96 −71
Merged

Adding BGS filter to prepare_sim #212

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8ae6d9a
menv: replace print statement with logger for mass environment calcul…
SBouchard01 Jun 4, 2026
dd58fe7
Change halo & particle filter for BGS
SBouchard01 Oct 23, 2025
ff33ff3
Refactor logging in prepare_sim.py to use logger instead of print sta…
SBouchard01 Oct 23, 2025
2452cf8
Add option to mask slab progress display (to avoid verbose)
SBouchard01 Oct 23, 2025
3e98fa6
prepare_sim: add back original subsample & submask methods w/ bgs fil…
SBouchard01 Jun 4, 2026
8b1cf21
add __init__.py file to abacusnbody.analysis module to allow import w…
SBouchard01 Jun 4, 2026
4f2c379
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 4, 2026
9f7ac17
forgotten print to logger statements from last update
SBouchard01 Jun 4, 2026
cbe0dc1
fix: replace logger names to use __name__
SBouchard01 Jun 19, 2026
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Empty file added abacusnbody/analysis/__init__.py
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6 changes: 5 additions & 1 deletion abacusnbody/hod/menv.py
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Original file line number Diff line number Diff line change
Expand Up @@ -9,12 +9,16 @@
import numpy as np
from scipy.spatial import KDTree

import logging

from ..util import cumsum

__all__ = ['do_Menv_from_tree']

DEFAULT_BATCH_SIZE = 10**5

logger = logging.getLogger(__name__)


def do_Menv_from_tree(
pos,
Expand Down Expand Up @@ -53,7 +57,7 @@ def do_Menv_from_tree(
if r_outer.ndim > 0:
r_outer = r_outer[mmask]

print('Building and querying trees for mass env calculation')
logger.info('Building and querying trees for mass env calculation')
tree = KDTree(pos, boxsize=treebox)

# we're taking potentially large differences, use float64
Expand Down
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