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Optimize thresholds for shared_annotations >= 3 and phenotype_similarity_score >= 1

request💡New feature or requestNew feature or request

Status: Open.

#178 In akikuno/TSUMUGI-dev;

· akikuno opened on May 31, 2026

Standardize “Severity” terminology to “Effect size” in TSUMUGI

request💡New feature or requestNew feature or request

solved✅️This issue has been resolved and will be reflected in the next versionThis issue has been resolved and will be reflected in the next version

Status: Open.

#177 In akikuno/TSUMUGI-dev;

· akikuno opened on May 31, 2026

Filter Phenotype page edges by exact target phenotype annotation

bug🐛BugBug

solved✅️This issue has been resolved and will be reflected in the next versionThis issue has been resolved and will be reflected in the next version

web🎨Web app and its user interfaceWeb app and its user interface

Status: Open.

#176 In akikuno/TSUMUGI-dev;

· akikuno opened on May 31, 2026

Add module display switching to Phenotype and Gene List pages

request💡New feature or requestNew feature or request

solved✅️This issue has been resolved and will be reflected in the next versionThis issue has been resolved and will be reflected in the next version

web🎨Web app and its user interfaceWeb app and its user interface

Status: Open.

#175 In akikuno/TSUMUGI-dev;

· akikuno opened on May 31, 2026

Fix layout selection and prevent excessive node spacing

request💡New feature or requestNew feature or request

solved✅️This issue has been resolved and will be reflected in the next versionThis issue has been resolved and will be reflected in the next version

web🎨Web app and its user interfaceWeb app and its user interface

Status: Open.

#174 In akikuno/TSUMUGI-dev;

· akikuno opened on May 31, 2026

Add soft/fuzzy phenotype modules to the Gene page

request💡New feature or requestNew feature or request

solved✅️This issue has been resolved and will be reflected in the next versionThis issue has been resolved and will be reflected in the next version

web🎨Web app and its user interfaceWeb app and its user interface

Status: Open.

#173 In akikuno/TSUMUGI-dev;

· akikuno opened on May 31, 2026

Optimize large Gene page network rendering without reducing graph data

request💡New feature or requestNew feature or request

solved✅️This issue has been resolved and will be reflected in the next versionThis issue has been resolved and will be reflected in the next version

web🎨Web app and its user interfaceWeb app and its user interface

Status: Open.

#172 In akikuno/TSUMUGI-dev;

· akikuno opened on May 31, 2026

Optimize ancestor filtering in pairwise phenotype similarity calculation

request💡New feature or requestNew feature or request

solved✅️This issue has been resolved and will be reflected in the next versionThis issue has been resolved and will be reflected in the next version

Status: Open.

#171 In akikuno/TSUMUGI-dev;

· akikuno opened on May 30, 2026

Align Phenodigm IC calculation with the original paper

bug🐛BugBug

solved✅️This issue has been resolved and will be reflected in the next versionThis issue has been resolved and will be reflected in the next version

Status: Open.

#170 In akikuno/TSUMUGI-dev;

· akikuno opened on May 29, 2026

Enable extraction of gene networks with opposite phenotypic effects

request💡New feature or requestNew feature or request

Status: Open.

#169 In akikuno/TSUMUGI-dev;

· akikuno opened on May 3, 2026

Add a toggle to show or hide module borders in visualizations

request💡New feature or requestNew feature or request

Status: Open.

#168 In akikuno/TSUMUGI-dev;

· akikuno opened on Apr 2, 2026

Add a slider to filter modules by node count in the web visualization

request💡New feature or requestNew feature or request

Status: Open.

#167 In akikuno/TSUMUGI-dev;

· akikuno opened on Apr 2, 2026