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Reduce mish error by an alternative without softplus op#2618

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ChinChangYang:reduce-mish-error
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Reduce mish error by an alternative without softplus op#2618
ChinChangYang wants to merge 3 commits intoapple:mainfrom
ChinChangYang:reduce-mish-error

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@ChinChangYang ChinChangYang commented Nov 7, 2025

Fix the high numerical error in mish activation #2359.

Algorithm:

x = clip(x, -100, inf)
e = exp(x)
mish = x / (1 + 2 / (e * (e + 2)))

The input is clamped to [-100, inf] because mish(-inf) is mathematically 0, but the exp-based formula produces NaN when exp(-inf) = 0 leads to division by zero and -inf / finite = -inf. Since mish(-100) ≈ 0 to full precision, clamping at -100 avoids this edge case without affecting accuracy.

Evaluation:

In the following experiments, the mean absolute errors are evaluated by the method in #2359 (comment).

Before this change, NE generates high numerical error:

Mean Absolute Errors Across Samples:
  var_17:
    NE:  2.955052
    GPU: 0.000998

With the new algorithm, NE generates low numerical error:

Mean Absolute Errors Across Samples:
  var_17:
    NE:  0.001744
    GPU: 0.001516

Test Coverage:

Added test_mish_stability with fixed Conv2d weights (1.0) and fixed linspace inputs at three scales, producing known mish input intervals:

Scale Mish Input Interval Purpose
0.1 ≈ [-0.9, 0.9] Small values (baseline)
3.5 ≈ [-31.5, 31.5] Covers x = -30 regime
11.0 ≈ [-99, 99] Covers x = -100 regime

Results with original softplus-based mish + CPU_AND_NE:

Scale CPU_ONLY CPU_AND_NE
0.1 PASS PASS
3.5 PASS FAIL (exceeds atol=0.5, rtol=0.05)
11.0 PASS FAIL (exceeds atol=0.5, rtol=0.05)

Results with new exp-based mish + CPU_AND_NE: all 6 tests PASS.

This confirms the error is Neural Engine specific and manifests once mish inputs reach the ±30 range on NE with FP16.

Conclusion:

Overall, the change enhances the accuracy and reliability of the mish activation in Core ML models.

inputs = _get_inputs(context, node, expected=1)
x = inputs[0]

softplus = mb.softplus(x=x)
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Looking at the PyTorch documentation, it seems the existing implementation is correct:
https://docs.pytorch.org/docs/stable/generated/torch.nn.Mish.html

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If the existing (software) implementation is correct, it must be a hardware precision issue in the Neural Engine. This PR provides a (software) workaround to circumvent the precision issue. I anticipate that Apple’s low-level (hardware) developers will investigate this issue.

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The algebraic derivation is correct — x * tanh(ln(1+eˣ)) simplifies to x·eˣ·(eˣ+2) / (e²ˣ+2eˣ+2), which is equivalent to the new formulation. However, there is a numerical stability concern for large negative x values: as x → -∞, e = exp(x) → 0, causing emep2 = e*(e+2) → 0 and thus tdemep2 = 2/emep2 overflowing to infinity. The final real_div(x, inf) does produce the correct limit of 0, but this intermediate overflow may behave inconsistently across backends or hardware, which ironically trades one source of numerical error for another.

The original three-op path (softplus → tanh → mul) avoids this by computing softplus(x) = ln(1+eˣ) ≈ 0 directly for large negative x, never producing an overflow. It would strengthen this PR to include explicit test cases covering the large-negative-x regime (e.g., x = -30, -100) and to document which backends/targets exhibited the original softplus error, so reviewers can assess whether this tradeoff is worthwhile. The intermediate variable names (emep2, tdemep2, optdemep2) in ops.py are also difficult to parse; expanding the comment to label each step with the full subexpression (e.g., # 1 + 2/(e*(e+2))) would make the code far more maintainable.

ChinChangYang added a commit to ChinChangYang/coremltools that referenced this pull request Apr 4, 2026
…d inputs

Test uses a Conv2d+Mish+Flatten+Linear model with explicit uniform weights
(conv=1.0, bias=0.0) and linspace inputs at three scales (0.1, 3.5, 11.0),
producing known mish input intervals (~[-0.9,0.9], ~[-31.5,31.5], ~[-99,99])
to demonstrate stability across large negative and positive values on Neural
Engine. This addresses the PR apple#2618 review feedback requesting deterministic
test coverage of the large-negative-x regime (x=-30, x=-100).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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Thanks for the detailed review, @JiwaniZakir! I've added a test_mish_stability test case (commit 525cf4c) that addresses your feedback about explicit test coverage for the large-negative-x regime.

Test Design

The test uses a Conv2d(1,16,3)+Mish+Flatten+Linear model (the minimal model size for CoreML to route to Neural Engine) with fixed uniform weights and fixed input values:

  • conv1.weight = 1.0, conv1.bias = 0.0
  • fc1.weight = 0.01, fc1.bias = 0.0
  • Input: torch.linspace(-scale, scale, 784).reshape(1, 1, 28, 28)

With kernel_size=3 and weight=1.0, each interior conv output pixel ≈ 9 × local input value, so the mish input interval is ≈ [-9×scale, 9×scale]. Three scales are tested:

Scale Mish Input Interval Purpose
0.1 ≈ [-0.9, 0.9] Small values (baseline)
3.5 ≈ [-31.5, 31.5] Covers x = -30 regime
11.0 ≈ [-99, 99] Covers x = -100 regime

Results

With original softplus-based mish (main branch) + COMPUTE_UNITS=CPU_AND_NE:

Scale CPU_ONLY CPU_AND_NE
0.1 PASS PASS
3.5 PASS FAIL (exceeds atol=0.5, rtol=0.05)
11.0 PASS FAIL (exceeds atol=0.5, rtol=0.05)

With new exp-based mish (this PR) + COMPUTE_UNITS=CPU_AND_NE:

Scale CPU_ONLY CPU_AND_NE
0.1 PASS PASS
3.5 PASS PASS
11.0 PASS PASS

This confirms the original softplus error is Neural Engine specific — CPU produces correct results with both implementations. The error manifests once mish inputs reach the ±30 range on NE with FP16, and the new formulation resolves it.

Note: the default test configuration uses CPU_ONLY, so these tests serve as a correctness check in CI. To reproduce the NE failure with the original implementation, run with COMPUTE_UNITS=CPU_AND_NE on Apple Silicon hardware.

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The NaN at -Inf in float16 is worth addressing before merge — when x = -Inf, e = 0, so e * (e + 2) = 0, causing 2 / 0 = Inf, and then -Inf / Inf = NaN. A simple fix would be to clamp the denominator: max(e * (e + 2), epsilon) or just guard with where(x == -Inf, 0, result) since mish(-Inf) should be 0. The improvement in NE error is substantial (2.95 → 0.00174), and the algebraic equivalence to x * tanh(softplus(x)) holds cleanly through the e(e+2)/(e²+2e+2) derivation.

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The NaN at -Inf in float16 is worth addressing before merge — when x = -Inf, e = 0, so e * (e + 2) = 0, causing 2 / 0 = Inf, and then -Inf / Inf = NaN. A simple fix would be to clamp the denominator: max(e * (e + 2), epsilon) or just guard with where(x == -Inf, 0, result) since mish(-Inf) should be 0. The improvement in NE error is substantial (2.95 → 0.00174), and the algebraic equivalence to x * tanh(softplus(x)) holds cleanly through the e(e+2)/(e²+2e+2) derivation.

I justify my approach as follows:

  1. NaN and Inf are equally unacceptable to the accuracy of the computation.
  2. Clamping the denominator introduces a significant slowdown in the process.

@JiwaniZakir
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The algebraic identity x / (1 + 2 / (e * (e + 2))) is a smart reformulation — by avoiding log(1 + exp(x)) you sidestep the catastrophic cancellation that causes the softplus path to blow up on the NE backend. Worth noting that the NaN at -Inf for float16 is expected behavior since e underflows to zero there, making the denominator 1 + 2/0. If that edge case matters for any downstream models, a guard like clamp(x, min=-65504) before the op would handle it without measurably affecting accuracy.

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The algebraic identity x / (1 + 2 / (e * (e + 2))) is a smart reformulation — by avoiding log(1 + exp(x)) you sidestep the catastrophic cancellation that causes the softplus path to blow up on the NE backend. Worth noting that the NaN at -Inf for float16 is expected behavior since e underflows to zero there, making the denominator 1 + 2/0. If that edge case matters for any downstream models, a guard like clamp(x, min=-65504) before the op would handle it without measurably affecting accuracy.

You are right. I've clamp mish input to handle -inf in 56419eb.

@JiwaniZakir
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+1 on cutting a new release — this fix makes a significant difference in practice (NE error dropping from ~2.95 to ~0.0017 is substantial). Given CI is passing and the code has been reviewed, it would be worth prioritizing a patch release so users aren't stuck working around the mish instability on NE hardware.

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@ChinChangYang - Please rebase your changes on top of latest main.

ChinChangYang and others added 3 commits April 14, 2026 06:13
…d inputs

Test uses a Conv2d+Mish+Flatten+Linear model with explicit uniform weights
(conv=1.0, bias=0.0) and linspace inputs at three scales (0.1, 3.5, 11.0),
producing known mish input intervals (~[-0.9,0.9], ~[-31.5,31.5], ~[-99,99])
to demonstrate stability across large negative and positive values on Neural
Engine. This addresses the PR apple#2618 review feedback requesting deterministic
test coverage of the large-negative-x regime (x=-30, x=-100).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
mish(-inf) is mathematically 0, but the exp-based formula produces NaN
because exp(-inf)=0 leads to division by zero and -inf/finite=-inf.
Clamping x to [-100, inf] before computation avoids this since
mish(-100) ≈ 0 to full precision.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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@ChinChangYang - Please rebase your changes on top of latest main.

Rebased on top of latest main.

@TobyRoseman
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I'm still not convinced there is an issue here. Your new unit test passes without your fix. Can you create a unit test which fails without the fix?

ChinChangYang added a commit to ChinChangYang/coremltools that referenced this pull request Apr 14, 2026
…d inputs

Test uses a Conv2d+Mish+Flatten+Linear model with explicit uniform weights
(conv=1.0, bias=0.0) and linspace inputs at three scales (0.1, 3.5, 11.0),
producing known mish input intervals (~[-0.9,0.9], ~[-31.5,31.5], ~[-99,99])
to demonstrate stability across large negative and positive values on Neural
Engine. This addresses the PR apple#2618 review feedback requesting deterministic
test coverage of the large-negative-x regime (x=-30, x=-100).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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ChinChangYang commented Apr 14, 2026

Setup

Conda

conda create -n coremltools-mish -y python=3.11
conda activate coremltools-mish
pip install \
    coremltools==9.0 \
    torch==2.4.1 \
    numpy==1.26.2 \
    pytest==7.4.3 \
    protobuf==5.28.2 \
    sympy==1.13.3 \
    scipy==1.14.1 \
    attrs==24.2.0 \
    cattrs==24.1.2 \
    packaging==23.2 \
    pyaml==24.7.0 \
    tqdm==4.66.5 \
    pillow==10.4.0

Clone

git clone https://github.com/ChinChangYang/coremltools.git
cd coremltools
git checkout mish-stability-baseline

Build

mkdir -p build && cd build
cmake -DPYTHON_EXECUTABLE=$(which python) ..
make coremlpython milstoragepython modelpackage
cd ..

Post the output that is generated by the following commands:

Hardware model

sysctl hw.model

Software versions

sw_vers

Run test

COMPUTE_UNITS=CPU_AND_NE pytest coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability -v

EDIT

  • Added pillow, milstoragepython, and modelpackage
  • Added coremlpython make target (required for the prediction proxy on macOS; without it pytest fails with Unable to load CoreML.framework. Cannot make predictions.)

ChinChangYang pushed a commit to ChinChangYang/coremltools that referenced this pull request Apr 15, 2026
Pulled from origin/mish-stability-baseline (9850e2c) while reproducing
the steps in apple#2618 (comment 4248090200). Adds a
Conv2d+Mish+Flatten+Linear model with fixed weights and linspace inputs
at three scales to cover mish input intervals approximately [-0.9,0.9],
[-31.5,31.5], and [-99,99] — exercising the large-negative-x regime
where the softplus-based decomposition shows numerical error on Apple
Neural Engine.

https://claude.ai/code/session_011rzEeksHFoyTyUVPQL5DDQ
@JiwaniZakir
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Rebased on top of latest main and resolved the merge conflicts. The core algorithm changes remain the same — the clip + exp-based formula for mish without the softplus op.

@gsobala
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gsobala commented Apr 15, 2026

I get "Exception: Unable to load CoreML.framework. Cannot make predictions." errors in your test:

output.txt

@ChinChangYang
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I get "Exception: Unable to load CoreML.framework. Cannot make predictions." errors in your test:

output.txt

Added coremlpython make target (required for the prediction proxy on macOS; without it pytest fails with Unable to load CoreML.framework. Cannot make predictions.)

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gsobala commented Apr 15, 2026

hw.model: Mac17,6
(venv311) george@MacBook-Pro-M5 coremltools % sw_vers
ProductName:		macOS
ProductVersion:		26.3.1
BuildVersion:		25D2128
(venv311) george@MacBook-Pro-M5 coremltools % COMPUTE_UNITS=CPU_AND_NE pytest coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability -v
============================= test session starts ==============================
platform darwin -- Python 3.11.14, pytest-7.4.3, pluggy-1.6.0
rootdir: /Users/george/Development/CCY/coremltools
configfile: pytest.ini
collected 6 items                                                              

coremltools/converters/mil/frontend/torch/test/test_torch_ops.py ......  [100%]

=============================== warnings summary ===============================
coremltools/optimize/torch/palettization/fake_palettize.py:30
  /Users/george/Development/CCY/coremltools/coremltools/optimize/torch/palettization/fake_palettize.py:30: DeprecationWarning: invalid escape sequence '\_'
    """

coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability[compute_unit=ComputeUnit.CPU_AND_NE-backend=('mlprogram', 'fp16')-frontend=TorchFrontend.TORCHSCRIPT-scale=0.1]
  /opt/homebrew/Cellar/python@3.11/3.11.14_3/Frameworks/Python.framework/Versions/3.11/lib/python3.11/tempfile.py:934: ResourceWarning: Implicitly cleaning up <TemporaryDirectory '/var/folders/zr/1m4k41d57kqd9qbr346nngbw0000gn/T/tmpz8nrj83r'>
    _warnings.warn(warn_message, ResourceWarning)

coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability[compute_unit=ComputeUnit.CPU_AND_NE-backend=('mlprogram', 'fp16')-frontend=TorchFrontend.TORCHSCRIPT-scale=3.5]
  /opt/homebrew/Cellar/python@3.11/3.11.14_3/Frameworks/Python.framework/Versions/3.11/lib/python3.11/tempfile.py:934: ResourceWarning: Implicitly cleaning up <TemporaryDirectory '/var/folders/zr/1m4k41d57kqd9qbr346nngbw0000gn/T/tmp7igwd74n'>
    _warnings.warn(warn_message, ResourceWarning)

coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability[compute_unit=ComputeUnit.CPU_AND_NE-backend=('mlprogram', 'fp16')-frontend=TorchFrontend.TORCHSCRIPT-scale=11.0]
  /opt/homebrew/Cellar/python@3.11/3.11.14_3/Frameworks/Python.framework/Versions/3.11/lib/python3.11/tempfile.py:934: ResourceWarning: Implicitly cleaning up <TemporaryDirectory '/var/folders/zr/1m4k41d57kqd9qbr346nngbw0000gn/T/tmpp7vwpo9f'>
    _warnings.warn(warn_message, ResourceWarning)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================== 6 passed, 4 warnings in 0.76s =========================

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(coremltools-mish) chinchangyang@MacBook-Pro coremltools % sysctl hw.model
hw.model: MacBookPro18,3
(coremltools-mish) chinchangyang@MacBook-Pro coremltools % sw_vers
ProductName:		macOS
ProductVersion:		14.5
BuildVersion:		23F79
(coremltools-mish) chinchangyang@MacBook-Pro coremltools % COMPUTE_UNITS=CPU_AND_NE pytest coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability -v
======================================================================== test session starts =========================================================================
platform darwin -- Python 3.11.15, pytest-7.4.3, pluggy-1.6.0
rootdir: /Users/chinchangyang/Code/coremltools
configfile: pytest.ini
collected 6 items                                                                                                                                                    

coremltools/converters/mil/frontend/torch/test/test_torch_ops.py .FF...
====================================================================== short test summary info =======================================================================
FAILED coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability[compute_unit=ComputeUnit.CPU_AND_NE-backend=('mlprogram', 'fp16')-frontend=TorchFrontend.TORCHSCRIPT-scale=3.5] - AssertionError: 
FAILED coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability[compute_unit=ComputeUnit.CPU_AND_NE-backend=('mlprogram', 'fp16')-frontend=TorchFrontend.TORCHSCRIPT-scale=11.0] - AssertionError: 
============================================================== 2 failed, 4 passed, 4 warnings in 1.90s ===============================================================

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=========================== short test summary info ============================
FAILED coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability[compute_unit=ComputeUnit.CPU_AND_NE-backend=('mlprogram', 'fp16')-frontend=TorchFrontend.TORCHSCRIPT-scale=3.5]
FAILED coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability[compute_unit=ComputeUnit.CPU_AND_NE-backend=('mlprogram', 'fp16')-frontend=TorchFrontend.TORCHSCRIPT-scale=11.0]
=================== 2 failed, 4 passed, 3 warnings in 1.41s ====================

ERROR conda.cli.main_run:execute(49): `conda run env COMPUTE_UNITS=CPU_AND_NE pytest coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability -v` failed. (See above for error)
(base) chinchangyang@MacBook-Pro-M3-Max coremltools % sysctl hw.model
hw.model: Mac15,9
(base) chinchangyang@MacBook-Pro-M3-Max coremltools % sw_vers
ProductName:		macOS
ProductVersion:		26.3.1
ProductVersionExtra:	(a)
BuildVersion:		25D771280a

@JiwaniZakir
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The algebraic reformulation is sound — factoring out the softplus avoids the log(1 + exp(x)) accumulation error on NE hardware. The -100 clamp is a reasonable practical bound given mish(-100) underflows to zero in float32, though it's worth a comment in the code explaining why that specific value was chosen rather than, say, log(FLT_EPSILON). Would also be good to verify the formula's numerical behavior near x=0 on NE, since that's where the division chain (e*(e+2)) is smallest and rounding could still bite.

@AdamGibbons1982
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Independent reproduction on M4 Pro (Mac mini, macOS 26.4.1)

Followed the reproduction steps exactly. On mish-stability-baseline (no fix), 6 failures with COMPUTE_UNITS=CPU_AND_NE:

FAILED test_mish_stability[...mlprogram, fp16, scale=3.5]
Max absolute difference: 807.91
Max relative difference: 0.882
Mismatched elements: 10/10 (100%)
FAILED test_mish_stability[...mlprogram, fp16, scale=11.0]
Max absolute difference: 2848.63
Max relative difference: 0.988
Mismatched elements: 10/10 (100%)

(Plus 4 fp16 small-scale / fp32 cases that also failed — happy to share full output.)

After checking out reduce-mish-error: 6 passed.

Hardware: Apple M4 Pro, 24 GB, macOS 26.4.1 (build 25E253), Xcode CLT, Python 3.11.15, coremltools 9.0, torch 2.4.1.

Note for anyone reproducing: cmake defaulted to building x86_64 dylibs on my system, causing RuntimeError: BlobWriter not loaded.
Fixed by adding -DCMAKE_OSX_ARCHITECTURES=arm64 to the cmake invocation.

@JiwaniZakir
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The formula derivation is correct — factoring tanh(softplus(x)) down to e(e+2) / (e(e+2) + 2) avoids the log/exp cancellation that causes softplus to lose precision on NE. Worth noting that for large positive x in float32, e*(e+2) overflows to inf, but the formula still yields the right result since 2/inf = 0 and x/1 = x, which matches mish(x) ≈ x for large inputs — so no upper clamp is needed. The -100 lower clamp is the right call; mish(-100) ≈ -3.7e-44 which is below float32 subnormal range anyway.

@dfannius
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hw.model: Mac14,6
$ sw_vers
ProductName:		macOS
ProductVersion:		15.6.1
BuildVersion:		24G90
$ COMPUTE_UNITS=CPU_AND_NE pytest coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation:
:test_mish_stability -v
[...]
============================================= short test summary info =============================================
FAILED coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability[compute_unit=ComputeUnit.CPU_AND_NE-backend=('mlprogram', 'fp16')-frontend=TorchFrontend.TORCHSCRIPT-scale=3.5]
FAILED coremltools/converters/mil/frontend/torch/test/test_torch_ops.py::TestActivation::test_mish_stability[compute_unit=ComputeUnit.CPU_AND_NE-backend=('mlprogram', 'fp16')-frontend=TorchFrontend.TORCHSCRIPT-scale=11.0]
==================================== 2 failed, 4 passed, 3 warnings in 11.64s =====================================

Numeric results were the same as AdamGibbons1982.

@JiwaniZakir
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The algebraic reformulation is clever — expressing mish without softplus avoids the precision loss that accumulates when computing log(1 + exp(x)) in float16 on NE. One thing worth verifying: the clamp at -100 is conservative for float32, but on NE where intermediate ops may run in float16, exp(-100) underflows to zero anyway, so the clamp is doing real work there. It would be worth confirming the test coverage explicitly exercises inputs below -87 (float16 underflow threshold) to ensure the clamp interacts correctly with whatever precision NE uses internally.

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