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Adding realign as a flag for DIAMOND protein clustering

feature request

Status: Open.

#974 In bbuchfink/diamond;

· Kenman-22 opened on Jul 24, 2026

Slow Diamond alignment in GenEra with custom RefSeq database

Status: Open.

#973 In bbuchfink/diamond;

· 1596130380a-debug opened on Jul 21, 2026

DIAMOND 2.2.2 segfaults during Bakta 1.12.0 sORF PSC search, while DIAMOND 2.2.0 succeeds with the same input and database.

Status: Open.

#971 In bbuchfink/diamond;

· jge30 opened on Jul 5, 2026

makedb --in /dev/stdin fails / Illegal seek

Status: Open.

#969 In bbuchfink/diamond;

· wwood opened on Jun 27, 2026

output differs on same file

Status: Open.

#964 In bbuchfink/diamond;

· j-s-135 opened on Jun 21, 2026

Clarify --comp-based-stats values

question

Status: Open.

#963 In bbuchfink/diamond;

· bernt-matthias opened on Jun 4, 2026

diamond view segmentation fault

Status: Open.

#962 In bbuchfink/diamond;

· bernt-matthias opened on Jun 2, 2026

Bug when clustering down to a single centroid

Status: Open.

#960 In bbuchfink/diamond;

· seanrjohnson opened on May 21, 2026

using > 2.1.25 with a blast database alias

Status: Open.

#958 In bbuchfink/diamond;

· DarrenObbard opened on May 19, 2026

Some of keywords of --outfmt 6 were revmoved in blastx

Status: Open.

#954 In bbuchfink/diamond;

· LilyAnderssonLee opened on May 6, 2026

--aln-out unusable with deepclust

Status: Open.

#950 In bbuchfink/diamond;

· vagkaratzas opened on Apr 16, 2026

Multi-node execution under SLURM does not progress as expected

Status: Open.

#949 In bbuchfink/diamond;

· hughuang12 opened on Apr 15, 2026