Skip to content

Navigation Menu

Appearance settings

View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

bigdatagenomics / avocado Public

Notifications You must be signed in to change notification settings
Fork 41
Star 71

Code
Issues 19
Pull requests 6
Actions
Projects
Wiki
Security and quality
Insights

Additional navigation options

Code
Issues
Pull requests
Actions
Projects
Wiki
Security and quality
Insights

Pull requests: bigdatagenomics/avocado

Labels 8 Milestones 1

Labels 8 Milestones 1

New pull request New

6 Open 165 Closed

6 Open 165 Closed

Author

Filter by author

Loading

Uh oh!

There was an error while loading. Please reload this page.

Label

Filter by label

Loading

Uh oh!

There was an error while loading. Please reload this page.

Use alt + click/return to exclude labels

or ⇧ + click/return for logical OR

Projects

Filter by project

Loading

Uh oh!

There was an error while loading. Please reload this page.

Milestones

Filter by milestone

Loading

Uh oh!

There was an error while loading. Please reload this page.

Reviews

Filter by reviews

No reviews Review required Approved review Changes requested

Assignee

Filter by who’s assigned

Assigned to nobody

Loading

Uh oh!

There was an error while loading. Please reload this page.

Sort

Sort by

Newest Oldest Most commented Least commented Recently updated Least recently updated Best match

Most reactions

Pull requests list

[AVOCADO] Update ADAM dependency to 0.26.0.

#307 opened Nov 13, 2018 by heuermh Member

Loading…

3

Per position allele count reporting utility ( like bam-readcount)

#297 opened Feb 20, 2018 by jpdna Member

Loading…

5

[AVOCADO-295] Set correct index when checking quality score during variant discovery.

#296 opened Feb 19, 2018 by fnothaft Member

Loading…

2

[AVOCADO-274] Add flag to emit all genotyped variants, regardless of quality.

#275 opened Oct 24, 2017 by fnothaft Member

Loading…

1

Pass assembly variants to realigner as knowns

#208 opened Feb 28, 2017 by fnothaft Member

Loading…

3

Work on getting Mutect algorithm up and running

#167 opened May 18, 2015 by jstjohn Contributor

Loading…

ProTip! no:milestone will show everything without a milestone.

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.