Formatting python scripts with black auto-formatter#73
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pavan-kotha-strandls wants to merge 1 commit intobioinform:accelerate_preprocess_newfrom
Open
Formatting python scripts with black auto-formatter#73pavan-kotha-strandls wants to merge 1 commit intobioinform:accelerate_preprocess_newfrom
pavan-kotha-strandls wants to merge 1 commit intobioinform:accelerate_preprocess_newfrom
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marghoob
reviewed
Jun 15, 2021
| abs(x[1] - pos_), | ||
| abs(min(x[1] + len(x[2]), pos_ + len(ref_)) - max(x[1], pos_))) <= max_dist)), record_set))) > 0: | ||
| chrom_, pos_, ref_, alt_ = push_left_var(ref_fasta, chrom, pos, ref, alt) | ||
| if ( |
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@pavanstrand the formatting seems to have gone crazy here. Would be better with a bit of refactoring here.
marghoob
reviewed
Jun 15, 2021
| ): | ||
| records[loc].append( | ||
| [ | ||
| chrom, |
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Would the formatter have options to control for such formatting? For example, the number of variables to put on one line (here, it seems to be 1)?
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@pavanstrand thanks for this. Did you run this branch on the data to ensure that the output VCF is identical to output before formatting? |
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Formatting changes with black auto-formatter.