Bioengineer turned computational scientist, building tools at the intersection of biology and code. Currently pursuing my MSc in Bioinformatics & Systems Biology at Gebze Technical University.

• 🔬 Research: Molecular dynamics · protein–ligand docking · binding pocket detection
• 🛠️ Currently building: Structural bioinformatics pipelines & visual tools
• 🤝 President @ ISCB-SC RSG-Türkiye
• 🎓 Research Fellow @ TÜBİTAK 3501 Career Development Program
• 🎓 Researcher @ TÜBİTAK 2209-A
• 🏥 Researcher @ TUSEB

Languages & Scripting

Bioinformatics & Simulation

Platforms & Tools

CLI tool for detecting small binding pockets in protein conformational ensembles and running community docking simulations. Developed under the TÜBİTAK 2209-A research program.

→ Demo

Streamlit web interface for the full PocketHunter pipeline — interactive pocket detection, clustering, docking analysis, and 3D molecular visualization in the browser. Docker-ready with real-time task monitoring.

Graph Convolutional Network for peptide immunogenicity prediction — merging structural biology with deep learning.

GROMACS 2025.3 GPU performance benchmarks on the TRUBA HPC cluster. 300+ runs: MPI/OpenMP scaling, single & dual GPU configurations.

Visual composer for Nextflow bioinformatics pipelines — drag, connect, export.