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add default params to rules if it will cause the rule to not run if there are none supplied

Status: Open.

#10 In broomej/serpent;

· broomej opened on Feb 12, 2026

add aliases for inconsistent arguments

Status: Open.

#9 In broomej/serpent;

· broomej opened on Feb 11, 2026

wrapper functions for SeqArray, SNPRelate, etc functions

Status: Open.

#8 In broomej/serpent;

· broomej opened on Feb 11, 2026

modify parse_sexcheck to output dataframe with status as a variable

Status: Open.

#7 In broomej/serpent;

· broomej opened on Feb 3, 2026

function: smartly read file depending on extension (rds, txt, csv, etc)

Status: Open.

#6 In broomej/serpent;

· broomej opened on Feb 3, 2026

convert scripts to Rmarkdown docs, or add doc option, where needed

Status: Open.

#4 In broomej/serpent;

· broomej opened on Jan 7, 2026

make function to apply seqSetFilter if arguments are supplied

Status: Open.

#3 In broomej/serpent;

· broomej opened on Jan 3, 2026

make function for parsing Snakemake args

Status: Open.

#2 In broomej/serpent;

· broomej opened on Jan 3, 2026

Create helper package for R scripts

enhancementNew feature or requestNew feature or request

Status: Open.

#1 In broomej/serpent;

· broomej opened on Jan 3, 2026