Migration to python 3.11, dynamic stability and more

.flake8

@@ -3,5 +3,4 @@ max-line-length = 99
 
 ignore = W503, F401, W605, E203
 
-exclude = test/*, doc/*, build/*, dist/* setup.py, ceasiompy/Stability*
-# Should be removed: ceasiompy/Stability* (too many things to refactor in those modules)
+exclude = test/*, doc/*, build/*, dist/* setup.py, ceasiompy/Stability*

.github/workflows/docker_centos.yml

@@ -15,10 +15,10 @@ jobs:
     - uses: actions/checkout@v4
       with:
         ref: ${{ github.ref }}
-    - name: Set up Python 3.8
+    - name: Set up Python 3.11.11
       uses: actions/setup-python@v2
       with:
-        python-version: 3.8
+        python-version: 3.11.11
 
     - name: Run Dockerfile installation and tests
       run: |

.github/workflows/flake8.yml

@@ -16,13 +16,13 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-    - name: Set up Python 3.8
+    - name: Set up Python 3.11.11
       uses: actions/setup-python@v2
       with:
-        python-version: 3.8
+        python-version: 3.11.11
 
     - name: Install flake8
       run: pip install flake8
 
     - name: Run flake8
-      run: flake8
+      run: flake8

.github/workflows/integrationtests.yml

@@ -16,24 +16,25 @@ env:
 
 jobs:
   build-linux:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-latest
     strategy:
       max-parallel: 5
 
     steps:
     - uses: actions/checkout@v3
-    - name: Set up Python 3.8
+    - name: Set up Python 3.11.11
       uses: actions/setup-python@v2
       with:
-        python-version: 3.8
+        python-version: 3.11.11
 
-    - name: Setup Mambaforge
+    - name: Setup Miniforge3
       uses: conda-incubator/setup-miniconda@v2
       with:
         miniforge-variant: Miniforge3
         miniforge-version: latest
         activate-environment: ceasiompy
-        use-mamba: true
+        use-mamba: false
+        conda-version: 25.3.1
 
     - name: Set cache date # With that, cache will be updated every day
       run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV
@@ -45,20 +46,15 @@ jobs:
       id: cache
 
     - name: Update environment
-      run: mamba env update -n ceasiompy -f environment.yml
+      run: conda env update -n ceasiompy -f environment.yml
       if: steps.cache.outputs.cache-hit != 'true'
 
     - name: Install ceasiompy with pip
       shell: bash -l {0}
       run: pip install -e .
 
-    - name: Install PyTornado
-      shell: bash -l {0}
-      run: installation/Ubuntu/install_pytornado.sh
-
-    - name: Install SUMO
-      shell: bash -l {0}
-      run: installation/Ubuntu/install_sumo.sh
+    - name: Install libGLU
+      run: sudo apt-get install -y libglu1-mesa-dev
 
     - name: Install AVL
       shell: bash -l {0}
@@ -92,4 +88,4 @@ jobs:
     # - name: Setup tmate session to SSH to the remote machine (for debugging)
     #   if: ${{ failure() }}
     #   uses: mxschmitt/action-tmate@v3
-    #   timeout-minutes: 15
+    #   timeout-minutes: 15

.github/workflows/unittests.yml

@@ -22,18 +22,19 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-    - name: Set up Python 3.8
+    - name: Set up Python 3.11.11
       uses: actions/setup-python@v2
       with:
-        python-version: 3.8
+        python-version: 3.11.11
 
-    - name: Setup Mambaforge
+    - name: Setup Miniforge3
       uses: conda-incubator/setup-miniconda@v2
       with:
         miniforge-variant: Miniforge3
         miniforge-version: latest
         activate-environment: ceasiompy
-        use-mamba: true
+        use-mamba: false
+        conda-version: 25.3.1
 
     - name: Set cache date # With that, cache will be updated every day
       run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV
@@ -45,13 +46,16 @@ jobs:
       id: cache
 
     - name: Update environment
-      run: mamba env update -n ceasiompy -f environment.yml
+      run: conda env update -n ceasiompy -f environment.yml
       if: steps.cache.outputs.cache-hit != 'true'
 
     - name: Install ceasiompy with pip
       shell: bash -l {0}
       run: pip install -e .
-
+
+    - name: Install libGLU
+      run: sudo apt-get install -y libglu1-mesa-dev
+
     - name: Run unit tests
       shell: bash -l {0}
       run: pytest -v ./ceasiompy --cov=ceasiompy/ --cov-report xml:coverage.xml
@@ -63,4 +67,4 @@ jobs:
         files: ./coverage.xml
         flags: unittests
         fail_ci_if_error: true
-        verbose: true
+        verbose: true

.gitignore

@@ -181,3 +181,5 @@ aircraft_loads.csv
 !/ceasiompy/ModuleTemplate/ToolInput/ToolInput.xml
 !/ceasiompy/utils/tests/tests_workflowfunctions/ToolInput/ToolInput.xml
 !/test_files/AeroMaps/*.csv
+
+/ceasiompy/Database/databases/ceasiompy.db

CONTRIBUTING.md

@@ -166,11 +166,6 @@ If you are new to Python we recommend some material that could help you (you can
 
 Other resources that could the useful.
 
-#### PyTornado
-
-- [PyTornado website](https://pytornado.readthedocs.io/en/latest/)
-- [Github repository](https://github.com/airinnova/pytornado)
-
 #### GMSH
 
 - [GMSH website](https://gmsh.info/)

README.md

@@ -66,14 +66,14 @@ These test cases are there to learn how to use CEASIOMpy. You will probably also
 
     ```bash
     cd WKDIR
-    ceasiompy_run -m ../test_files/CPACSfiles/D150_simple.xml PyTornado SaveAeroCoefficients
+    ceasiompy_run -m ../test_files/CPACSfiles/D150_simple.xml PyAVL SaveAeroCoefficients
     ```
 
 Follow the [test cases](#test-cases) to discover the different way of using CEASIOMpy.
 
 ### Examples of workflows
 
-- **Simple workflow with PyTornado (Vortex Lattice Method)**
+- **Simple workflow with PyAVL (Vortex Lattice Method)**
 
 <div align="center">
 
@@ -90,21 +90,21 @@ Follow the [test cases](#test-cases) to discover the different way of using CEAS
 
 ```mermaid
   graph LR;
-      CLCalculator-->CPACS2SUMO;
-      CPACS2SUMO-->SUMOAutoMesh;
-      SUMOAutoMesh-->SU2Run;
+      CPACS2Updater-->CPACS2Gmsh;
+      CPACS2Gmsh-->SU2Run;
       SU2Run-->ExportCSV;
+      ExportCSV-->Database;
 ```
 
 </div>
 
 ### Available modules
 
-There are many different modules available in CEASIOMpy that can be combined in different workflows. The list of available modules is shown below. The module status is marked as follows:
+There are many different modules available in CEASIOMpy that can be combined to create different workflows. The list of available modules is shown below. The modules' statuses are marked as follows:
 
-:heavy_check_mark: : The module should work as expected. There may be some minor bugs, don't hesitate to report them (more details [here](CONTRIBUTING.md#reporting-bugs)).
+:heavy_check_mark: : The module should work as expected. If you find bugs, do not hesitate to report them (more details [here](CONTRIBUTING.md#reporting-bugs)).
 
-:warning: : The module does not work completely as expected. It is not a bug, but some features or data handling are not yet compatible with the new file structure. Check the [Kanban Board](https://github.com/cfsengineering/CEASIOMpy/projects/1) to see planned and in-progress features.
+:warning: : The module does not work as expected. It is not a bug, but some features or data handling are not yet compatible with the new file structure. Check the [Kanban Board](https://github.com/cfsengineering/CEASIOMpy/projects/1) to see planned and in-progress features.
 
 :x: : The module does not work at all. Some functions have been written, but need a lot of changes to be compatible with the rest of CEASIOMpy.
 
@@ -123,6 +123,7 @@ There are many different modules available in CEASIOMpy that can be combined in
 #### Geometry and Mesh
 
 - [CPACSCreator](ceasiompy/CPACSCreator/README.md) :heavy_check_mark:
+- [CPACSUpdater](ceasiompy/CPACSUpdater/README.md) :heavy_check_mark:
 - [CPACS2GMSH](ceasiompy/CPACS2GMSH/README.md) :heavy_check_mark:
 - [CPACS2SUMO](ceasiompy/CPACS2SUMO/README.md) :heavy_check_mark:
 - [SUMOAutoMesh](ceasiompy/SUMOAutoMesh/README.md) :warning:
@@ -133,7 +134,6 @@ There are many different modules available in CEASIOMpy that can be combined in
 #### Aerodynamics
 
 - [CLCalculator](ceasiompy/CLCalculator/README.md) :heavy_check_mark:
-- [PyTornado](ceasiompy/PyTornado/README.md) :heavy_check_mark:
 - [PyAVL](ceasiompy/PyAVL/README.md) :heavy_check_mark:
 - [SU2Run](ceasiompy/SU2Run/README.md) :heavy_check_mark:
 - [SkinFriction](ceasiompy/SkinFriction/README.md) :heavy_check_mark:
@@ -154,12 +154,17 @@ There are many different modules available in CEASIOMpy that can be combined in
 
 - Range :warning:
 - [StaticStability](./ceasiompy/StaticStability/README.md) :heavy_check_mark:
+- [DynamicStability](./ceasiompy/DynamicStability/README.md) :heavy_check_mark:
 
 <img align="right" height="80" src="documents/logos/CEASIOMpy_banner_structure.png">
 
 #### Structure
 
-- AeroFrame :heavy_check_mark:
+- AeroFrame :x:
+
+#### Data Analysis and Storage
+
+- [Database](./ceasiompy/Database/README.md) :heavy_check_mark:
 
 ## Contributing
 

ceasiompy/.flake8

@@ -0,0 +1,7 @@
+[flake8]
+max-line-length = 99
+
+ignore = W503, F401, W605, E203
+
+exclude = test/*, doc/*, build/*, dist/* setup.py, ceasiompy/Stability*
+# Should be removed: ceasiompy/Stability* (too many things to refactor in those modules)