Cleanup

Examples/ADM_Parameters/e_adm_2_base_parameters.json

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+{"R": 0.083145, "T_base": 298.15, "P_atm": 1.013, "T_op": 308.15, "V_liq": 3400, "V_gas": 300, "pH_UL_ac": 7, "pH_LL_ac": 6, "pH_UL_aa": 5.5, "pH_LL_aa": 4, "pH_UL_h2": 6, "pH_LL_h2": 5, "pH_UL_pro": 5.5, "pH_LL_pro": 4, "pH_UL_bu": 5.5, "pH_LL_bu": 4, "pH_UL_va": 5.5, "pH_LL_va": 4, "q_in": 170,"K_W":1e-14}

Examples/ADM_Parameters/e_adm_2_initial_conditions.json

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+{"S_su": 0.1, "S_aa": 0.01, "S_fa": 0.01, "S_va": 0.001, "S_bu": 0.001, "S_et": 0.0, "S_lac": 0.0, "S_pro": 0.001, "S_cap": 0.0, "TSS": 12.0, "TDS": 3.0, "S_ac": 0.001, "X_chain_lac": 0.01, "S_h2": 1e-08, "S_ch4": 1e-05, "S_IC": 0.04, "S_IN": 0.01, "S_I": 0.02, "X_ac_et": 0.001, "X_Me_ac": 0.1, "X_Me_CO2": 0.1, "S_cap_ion": 0.001, "S_lac_ion": 0.0, "X_et": 0.01, "X_lac": 0.01, "X_chain_et": 0.01, "X_ch": 5.0, "X_pr": 20.0, "X_ac_lac": 0.001, "X_VFA_deg": 0.01, "X_li": 5.0, "X_su": 0.1, "X_aa": 0.01, "X_fa": 0.01, "X_I": 25.0, "S_cation": 0.04, "S_anion": 0.02, "S_H_ion": 3.423e-08, "S_va_ion": 0, "S_bu_ion": 0.0, "S_pro_ion": 0.0, "S_ac_ion": 0, "S_hco3_ion": 0, "S_nh3": 0.0, "S_gas_h2": 0, "S_gas_ch4": 0, "S_gas_co2": 0.0, "S_nh4_ion": 0, "S_co2": 0}

Examples/ADM_Parameters/e_adm_2_inlet_conditions.json

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+{"S_su_in": 0.01, "S_aa_in": 0.001, "S_fa_in": 0.001, "S_va_in": 0.001, "S_bu_in": 0.001, "S_et_in": 0.0, "S_lac_in": 0.0, "S_pro_in": 0.001, "S_cap_in": 0.0, "TSS_in": 12.0, "TDS_in": 3.0, "S_ac_in": 0.001, "X_chain_lac_in": 0.01, "S_h2_in": 1e-08, "S_ch4_in": 1e-05, "S_IC_in": 0.04, "S_IN_in": 0.01, "S_I_in": 0.02,  "X_ac_et_in": 0.001, "X_Me_ac_in": 0.1, "X_Me_CO2_in": 0.1, "S_cap_ion_in": 0.001, "S_lac_ion_in": 0.0, "X_et_in": 0.01, "X_lac_in": 0.01, "X_chain_et_in": 0.01, "X_ac_lac_in": 0.01, "X_ch_in": 5.0, "X_pr_in": 20.0, "X_VFA_deg_in": 0.01, "X_li_in": 5.0, "X_su_in": 0.0, "X_aa_in": 0.01, "X_fa_in": 0.01, "X_I_in": 25.0, "S_cation_in": 0.04, "S_anion_in": 0.02, "S_H_ion_in": 3.423e-08, "S_va_ion_in": 0, "S_bu_ion_in": 0.0, "S_pro_ion_in": 0.0, "S_ac_ion_in": 0, "S_hco3_ion_in": 0, "S_nh3_in": 0.0, "S_gas_h2_in": 0, "S_gas_ch4_in": 0, "S_gas_co2_in": 0.0, "S_nh4_ion_in": 0, "S_co2_in": 0}

Examples/ADM_Parameters/e_adm_2_model_parameters.json

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+{"f_sI_TDS": 0.7, "f_xI_TSS": 0.8, "f_ch_TSS": 0.05, "f_ch_TDS": 0.1, "f_pr_TSS": 0.05, "f_pr_TDS": 0.1, "f_li_TSS": 0.1, "f_li_TDS": 0.1, "N_aa": 0.007, "C_su": 0.0313, "C_et": 0.0208, "C_lac": 0.034, "C_aa": 0.03, "C_fa": 0.0217, "f_pro_su": 0.2003306746482849, "f_et_su": 0.09224545955657959, "f_lac_su": 0.25179609656333923, "f_ac_su": 0.41, "N_bac": 0.005714285714285714, "C_bu": 0.025, "C_pro": 0.0268, "C_ac": 0.0313, "C_bac": 0.0313, "k_m_bu_deg": 1.9767358303070068, "Y_su": 0.011714371852576733, "K_I_h2_ox": 474.67657470703125, "f_pro_aa": 0.6809548735618591, "f_ac_aa": 0.2, "f_et_aa": 0.005842878948897123, "f_lac_aa": 0.01188918761909008, "Y_ac_et": 0.16654299199581146, "f_et_ac": -0.2900020480155945, "f_bu_ac": 0.9618726968765259, "Y_ac_lac": 0.39503395557403564, "f_lac_ac": -0.023403070867061615, "f_h2_ac": 0.12396841496229172, "Y_ac_et_ox": 0.10000000149011612, "Y_pro_lac_ox": 0.018363816663622856, "Y_pro_et": 0.06936532258987427, "f_et_pro": -0.48498010635375977, "f_va_pro": 1.0, "Y_pro_lac": 0.10840124636888504, "f_lac_pro": -0.30524370074272156, "f_h2_pro": 0.07729185372591019, "Y_chain_et_pro": 0.009999999776482582, "Y_chain_lac_pro": 0.023025453090667725, "Y_bu": 0.12348975986242294, "Y_bu_et": 0.053466036915779114, "f_et_bu": -0.19345103204250336, "f_cap_bu": 1.0, "C_cap": 0.0241, "Y_bu_lac": 0.13504824042320251, "f_lac_bu": -0.11503596603870392, "f_h2_bu": 0.058134790509939194, "Y_va": 0.10542991012334824, "Y_cap": 0.6000000238418579, "Y_h2_ac": 0.1298234462738037, "Y_h2_CO2": 0.11287706345319748, "f_ac_h2": -1.56, "Y_Me_ac": 0.16423171758651733, "Y_Me_CO2": 0.1794177144765854, "C_ch4": 0.0156, "Y_Me_h2": 0.24171334505081177, "C_va": 0.024, "Y_aa": 0.044384412467479706, "Y_fa": 0.04147692024707794, "Y_ac": 0.048393364995718, "k_dis_TSS": 0.453651487827301, "k_dis_TDS": 3.0502877235412598, "k_hyd_ch": 1.9502079486846924, "k_hyd_pr": 3.724907636642456, "k_hyd_li": 8.882577896118164, "K_S_IN": 6.1387224197387695, "k_m_su": 25.0, "K_S_su": 2.760401487350464, "k_m_aa": 6.667466640472412, "K_S_aa": 25.657630920410156, "k_m_fa": 0.7610880136489868, "K_S_fa": 0.3085835874080658, "K_I_h2_fa": 3.1387853622436523, "k_m_bu": 1.6656396389007568, "K_S_bu": 8.78583812713623, "k_m_va": 0.23803304135799408, "K_S_va": 4.571810722351074, "k_m_cap": 2.315437078475952, "K_S_cap": 6.921456813812256, "K_I_h2_c4": 4.192772388458252, "k_m_pro": 3.2757725715637207, "K_S_pro": 3.0495388507843018, "k_m_et": 17.410297393798828, "K_S_et": 59.054527282714844, "k_m_lac": 5.009902477264404, "K_S_lac": 40.0, "K_I_h2_pro": 37.437564849853516, "k_m_ac": 10.0, "K_S_ac": 1.177742838859558, "K_I_nh3": 0.0018, "k_m_h2_Me_ac": 25.82659149169922, "K_S_h2_Me_ac": 0.005097816698253155, "K_S_ac_Me": 0.5, "k_m_h2_Me_CO2": 1.3759146928787231, "K_S_h2_Me_CO2": 0.0012022653827443719, "K_S_CO2_Me": 0.04876235872507095, "k_dec_X_su": 0.02, "k_dec_X_aa": 0.02, "k_dec_X_fa": 0.02, "k_dec_X_ac": 0.02, "f_pro_fa": 0.6000000238418579, "f_et_fa": 0.02676902338862419, "f_lac_fa": 0.0034169757273048162, "f_ac_fa": 0.1, "K_S_ac_lac": 40.92828369140625, "K_S_pro_et": 0.18028509616851807, "K_S_bu_et": 0.3648880124092102, "K_S_bu_lac": 0.13413147628307343, "K_S_pro_lac": 0.13037194311618805, "K_S_ac_et": 0.2780764400959015, "k_dec_X_chain_et": 0.001, "k_dec_X_chain_lac": 0.001, "k_dec_X_VFA_deg": 0.001, "k_dec_X_Me_ac": 0.001, "k_dec_X_Me_CO2": 0.001, "k_dec_X_et": 0.001, "k_dec_X_lac": 0.001, "K_w": 2.0787710559543604e-14, "K_a_va": 1.3803842646028839e-05, "K_a_bu": 1.5135612484362071e-05, "K_a_pro": 1.3182567385564074e-05, "K_a_cap": 1.3182567385564074e-05, "f_co2_ch4": -0.005453469697386026, "K_a_ac": 1.7378008287493764e-05, "K_a_lac": 1.7378008287493764e-05, "K_a_co2": 4.937073397534363e-07, "K_a_IN": 1.1102866527080678e-09, "k_A_B_va": 10000000000, "k_A_B_bu": 10000000000, "k_A_B_lac": 10000000000, "k_A_B_cap": 10000000000, "k_A_B_pro": 10000000000, "k_A_B_ac": 10000000000, "k_A_B_co2": 10000000000, "k_A_B_IN": 10000000000, "k_p": 0, "k_L_a": 20.915611267089844, "K_H_co2": 0.027146692900075386, "K_H_ch4": 0.0011619027336733539, "K_H_h2": 0.0007384654293536963, "K_pH_aa": 0.22437971830368042, "nn_aa": 0.6890156865119934, "K_pH_ac": 0.050145335495471954, "n_ac": 4.402726650238037, "K_pH_h2": 3.162277660168379e-06, "n_h2": 3.0, "K_pH_pro": 0.06130869314074516, "n_pro": 3.101494550704956, "K_pH_bu": 0.04155443236231804, "n_bu": 6.484157085418701, "K_pH_va": 0.02009737305343151, "n_va": 1.139792561531067, "K_b_nh3":1.8e-5,"K_pH_cap": 0.05653519555926323, "n_cap": 0.10086186230182648}

Examples/ADM_Parameters/e_adm_2_reactions.json

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+["TSS_Disintegration", "TDS_Disintegration", "Hydrolysis carbohydrates", "Hydrolysis proteins", "Hydrolysis lipids", "Uptake of sugars", "Uptake of amino acids", "Uptake of LCFA", "Uptake of acetate_et", "Uptake of acetate_lac", "Uptake of propionate_et", "Uptake of propionate_lac", "Uptake of butyrate_et", "Uptake of butyrate_lac", "Uptake of valerate", "Uptake of caproate","Uptake of butyrate", "Methanogenessis from acetate and h2", "Methanogenessis from CO2 and h2", "Uptake of ethanol", "Uptake of lactate", "Decay of Xsu", "Decay of Xaa", "Decay of Xfa", "Decay of X_ac_et", "Decay of X_ac_lac", "Decay of Xpro", "Decay of X_chain_et", "Decay of X_chain_lac", "Decay of X_VFA_deg", "Decay of X_Me_ac", "Decay of X_Me_CO2", "Decay of Xet", "Decay of Xlac", "Acid Base Equilibrium (Va)", "Acid Base Equilibrium (Bu)", "Acid Base Equilibrium (Pro)", "Acid Base Equilibrium (Cap)", "Acid Base Equilibrium (Lac)", "Acid Base Equilibrium (Ac)", "Acid Base Equilibrium (CO2)", "Acid Base Equilibrium (In)", "Gas Transfer H2", "Gas Transfer CH4", "Gas Transfer CO2"]

Examples/ADM_Parameters/e_adm_2_species.json

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+["S_su", "S_aa", "S_fa", "S_va", "S_bu", "S_pro", "S_et", "S_lac", "S_cap", "S_ac", "S_h2", "S_ch4", "S_IC", "S_IN", "S_I", "TSS", "TDS", "X_ch", "X_pr", "X_li", "X_su", "X_aa", "X_ac_et", "X_ac_lac", "X_fa", "X_VFA_deg", "X_et", "X_lac", "X_chain_et", "X_chain_lac", "X_Me_ac", "X_Me_CO2", "X_I", "S_cation", "S_anion", "S_H_ion", "S_va_ion", "S_bu_ion", "S_pro_ion", "S_cap_ion", "S_lac_ion", "S_ac_ion", "S_hco3_ion", "S_co2", "S_nh3", "S_nh4_ion", "S_gas_h2", "S_gas_ch4", "S_gas_co2"]