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Negation fix #8

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Negation fix #8

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5be9e3c
PRN fixes
surangak Aug 3, 2018
2db90ac
more fixes
surangak Aug 5, 2018
b295f9b
fixes
surangak Aug 5, 2018
2a4ac3c
fixes
surangak Aug 5, 2018
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2 changes: 2 additions & 0 deletions GeneralNegEx.Java.v.1.2.05092009/negex_triggers.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -63,6 +63,8 @@ not reveal [PREN]
not see [PREN]
not to be [PREN]
patient was not [PREN]
PRN for [PREN]
P.R.N. for [PREN]
rather than [PREN]
resolved [PREN]
test for [PREN]
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4 changes: 4 additions & 0 deletions negex.python/Annotations-1-120.txt
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Expand Up @@ -2375,3 +2375,7 @@ Report No. Concept Sentence Negation
119 ABDOMEN: 1. NO FINDINGS TO SUGGEST FDG AVID MALIGNANCY NO FINDINGS TO SUGGEST FDG AVID MALIGNANCY. Affirmed
119 CIRRHOTIC MORPHOLOGY OF THE LIVER AND SMALL UPPER ABDOMINAL LYMPH NODES ARE LIKELY THE SEQUELA OF CHRONIC UNDERLYING LIVER DISEASE CIRRHOTIC MORPHOLOGY OF THE LIVER AND SMALL UPPER ABDOMINAL LYMPH NODES ARE LIKELY THE SEQUELA OF CHRONIC UNDERLYING LIVER DISEASE. Affirmed
119 PELVIS: NO FINDINGS TO SUGGEST FDG AVID MALIGNANCY PELVIS: NO FINDINGS TO SUGGEST FDG AVID MALIGNANCY. Affirmed
120 vomiting PRN for vomiting. Negated
120 vomiting prn for vomiting. Negated
120 vomiting P.R.N. for vomiting. Negated
120 vomiting P.R.N for vomiting. Negated
2 changes: 2 additions & 0 deletions negex.python/negex_triggers.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -63,6 +63,8 @@ not reveal [PREN]
not see [PREN]
not to be [PREN]
patient was not [PREN]
PRN for [PREN]
P.R.N. for [PREN]
rather than [PREN]
resolved [PREN]
test for [PREN]
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2 changes: 2 additions & 0 deletions pyConTextNLP/tags/06252012/src/pyConTextNLP/itemData.py
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Expand Up @@ -64,6 +64,8 @@ def extend(self,iterable):
super(itemData,self).extend(iterable)

probableNegations = itemData([
["PRN for","PROBABLE_NEGATED_EXISTENCE","","forward"],
["P.R.N. for","PROBABLE_NEGATED_EXISTENCE","","forward"],
["can rule out","PROBABLE_NEGATED_EXISTENCE","","forward"],
["cannot be excluded","PROBABLE_NEGATED_EXISTENCE",r"""(cannot|can\snot)\sbe\sexcluded""","backward"],
["is not excluded","PROBABLE_NEGATED_EXISTENCE",r"""(is|was|are|were)\snot\sexcluded""",'backward'],
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2 changes: 2 additions & 0 deletions pyConTextNLP/tags/06252012/src/pyConTextNLP/pyConTextGraph/itemData.py
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Expand Up @@ -107,6 +107,8 @@ def extend(self,iterable):


probableNegations = itemData(
["PRN for","PROBABLE_NEGATED_EXISTENCE","","forward"],
["P.R.N. for","PROBABLE_NEGATED_EXISTENCE","","forward"],
["can rule out","PROBABLE_NEGATED_EXISTENCE","","forward"],
["cannot be excluded","PROBABLE_NEGATED_EXISTENCE",r"""cannot\sbe\s((entirely|completely)\s)?(excluded|ruled out)""","backward"],
["is not excluded","PROBABLE_NEGATED_EXISTENCE",r"""(is|was|are|were)\snot\sexcluded""",'backward'],
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