Skip to content

cheminfo/uv-spectrum

Repository files navigation

uv-spectrum

NPM version Test coverage npm download

Parse and process UV-Vis absorption spectra. The package wraps common-spectrum with UV-specific variable derivation and ships readers for JCAMP-DX, plain-text two-column data, and Cary Eclipse CSV files.

Installation

$ npm install --save uv-spectrum

Usage

import { fromJcamp } from 'uv-spectrum';

const analysis = fromJcamp(jcamp);

Other readers exposed by the package: fromText and fromCaryEclipseCSV. Core helpers re-exported from common-spectrum (Analysis, AnalysesManager, autoPeakPicking, peakPicking, toJcamp, toMatrix, toText) are also importable from uv-spectrum.

When loading a UV-Vis spectrum, additional variables are derived from the y axis depending on its label:

Absorbance / transmittance input

Key Label Units Description
x Wavelength nm Wavelength from the source file
y (from source file) Original y-axis data
a Absorbance Absorbance values (computed from transmittance if needed)
t Transmittance (%) Percent transmittance (computed from absorbance if needed)

The conversion is automatic: if the y label contains "transmittance", absorbance is computed as -log10(T / factor); if it contains "absorbance", transmittance is computed as 10^(-A) * 100. For transmittance, the presence of % or percent in the label determines whether the input is already scaled to 0-100 or 0-1.

Reflectance input

When the y label contains "reflect", reflectance-derived quantities are added instead:

Key Label Units Description
x Wavelength nm Wavelength from the source file
y (from source file) Original reflectance data
r Reflectance Copy of the original reflectance values
k F(R) Kubelka-Munk function: (1 - R)^2 / (2 R)
e Energy eV Photon energy converted from wavelength
c (F(R) / 100 * h * v / e)^(1/2) Arbitrary units Tauc plot quantity (direct-allowed transition, factor 2)

License

MIT

About

Deal with UV spectra

Resources

License

Stars

Watchers

Forks

Packages

 
 
 

Contributors