Claassen Lab
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- MTI_Pseudochannel_gen Public Forked from WirthMax/MTI_Pseudochannel_gen
This tool lets you combine multiple channels from a Multiplex tissue Imaging experiment into a single "pseudochannel" that works better for segmentation models like Cellpose than any individual marker alone.
claassenlab/MTI_Pseudochannel_gen’s past year of commit activity - MORESCA Public Forked from mbruhns/MORESCA
This repository provides a template and some resources on standardized scRNA-seq analysis using Python.
claassenlab/MORESCA’s past year of commit activity - cellpose Public Forked from MouseLand/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
claassenlab/cellpose’s past year of commit activity - cytopath Public Forked from aron0093/cytopath
Simulation based inference of differentiation trajectories from RNA velocity fields.
claassenlab/cytopath’s past year of commit activity - Teamproject-2023 Public archive
Implementation of RNA velocity for estimation of single cell transcriptomic dynamics.
claassenlab/Teamproject-2023’s past year of commit activity
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