Refactor to use variation-normalizer Python library#21
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theferrit32 merged 17 commits intomainfrom Aug 6, 2025
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Allele,CopyNumberCount,CopyNumberChangeto use methods in thevariation-normalizationcodeThis does change the prereqs for running this process.
The VICC-customized UTA must be used as it adds a table which is referenced in some operations by the
variation-normalizationcode. The compose.yaml below includes this and it includes a necessary gene-normalizer dynamodb server. Change the local ports as necessary to avoid collisions.https://github.com/cancervariants/variation-normalization/blob/0.15.0/compose.yaml
It also makes some changes to add an asyncio event loop to each worker process so they can execute calls into the async
variation-normalizationfunctions. A future feature here may be to update our code to use asyncio.