feat: add filesystem, thinking, and structured reasoning tools#43

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chhot2u wants to merge 8 commits intococoindex-io:mainfrom

chhot2u:feat/filesystem-tools

Commits on Mar 9, 2026

feat: add fast filesystem tools (find_files, read_file, grep_code, directory_tree)
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feat: add write_file tool for instant file creation and updates
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feat: add edit_file tool for exact string replacement in files
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feat: add advanced thinking tools (sequential, extended, ultra, learning loop, RL)
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Commits on Mar 10, 2026

feat: add evidence_tracker, premortem, inversion_thinking, effort_estimator tools
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Commits on Mar 11, 2026

Commits on Mar 14, 2026

fix: resolve 14 bugs, architecture issues, and quality improvements
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