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Update tmt.config, msstats_converter and isobaric_workflow meta #92

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Merged
daichengxin merged 1 commit into from
Jul 10, 2026
Merged

Update tmt.config, msstats_converter and isobaric_workflow meta #92

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2 changes: 1 addition & 1 deletion conf/modules/tmt.config
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@

process {
// MSSTATSCONVERTER
withName: '.*:TMT:PROTEIN_QUANT:MSSTATS_CONVERTER' {
withName: '.*:TMT:MSSTATS_CONVERTER' {
ext.args = "-debug $params.protein_quant_debug"
}
}
1 change: 1 addition & 0 deletions modules/local/openms/isobaric_workflow/meta.yml
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Expand Up @@ -9,6 +9,7 @@ tools:
Extracts and normalizes isobaric labeling information from an LC-MS/MS experiment.
homepage: https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/TOPP_IsobaricWorkflow.html
documentation: https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/TOPP_IsobaricWorkflow.html
input:
- mzmls:
type: file
description: Input Spectra in mzML format
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4 changes: 2 additions & 2 deletions modules/local/openms/msstats_converter/main.nf
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Expand Up @@ -4,8 +4,8 @@ process MSSTATS_CONVERTER {
label 'openms'

container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'oras://ghcr.io/bigbio/openms-tools-thirdparty-sif:2025.04.14' :
'ghcr.io/bigbio/openms-tools-thirdparty:2025.04.14' }"
'oras://ghcr.io/bigbio/openms-tools-thirdparty-sif:2026.06.06' :
'ghcr.io/bigbio/openms-tools-thirdparty:2026.06.06' }"

input:
path consensusXML
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