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@dantaslab

The Dantas Lab

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  1. resfams resfams Public

    Antibiotic Resistance annotation by profile Hidden Markov Models

    3

  2. resAnnotator resAnnotator Public

    Python 3

  3. NICUExposome NICUExposome Public

    Scripts for NICU Exposome manuscript

    R 2

  4. parfums parfums Public

    Perl 1 2

  5. resfams_update resfams_update Public

    Update to resfams database

    Python 1

  6. spack-gdlab-repo spack-gdlab-repo Public

    Dantas Lab's custom Spack packages

    Python 1 1

Repositories

Showing 10 of 26 repositories
  • DOME2 Public

    Code repository for Interspecies cooperation in the farm-associated nasal microbiome (2026)

    dantaslab/DOME2’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 5, 2026
  • spack-gdlab-repo Public

    Dantas Lab's custom Spack packages

    dantaslab/spack-gdlab-repo’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Mar 4, 2026
  • NEC_phageome Public

    Divergent Microbial Preludes to Necrotizing Enterocolitis Defined by Gut Phages and Bacterial Resistomes

    dantaslab/NEC_phageome’s past year of commit activity
    R 0 0 0 0 Updated Mar 2, 2026
  • Retired-DOME2 Public

    Retired Repo for DOME2

    dantaslab/Retired-DOME2’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 24, 2026
  • SIG_phageome Public

    Unique bacterial-phage interaction signatures distinguish Staphylococcus pseudintermedius in diagnostic environments

    dantaslab/SIG_phageome’s past year of commit activity
    R 0 0 0 0 Updated Feb 7, 2026
  • 2025_DuodenumRTMicrobiome Public

    Analysis of duodenum and stool microbiomes after focal duodenal irradiation in mice.

    dantaslab/2025_DuodenumRTMicrobiome’s past year of commit activity
    R 0 MIT 0 0 0 Updated Nov 18, 2025
  • FimTyper Public
    dantaslab/FimTyper’s past year of commit activity
    Perl 0 0 0 0 Updated Aug 28, 2025
  • ClermonTyping Public Forked from A-BN/ClermonTyping

    Clermont PCR method In-Silico

    dantaslab/ClermonTyping’s past year of commit activity
    Python 0 GPL-3.0 12 0 0 Updated May 17, 2025
  • 2023_Blake_TrEAT-PREVENT-TD Public

    Data, code, and analyses for Blake, Schwartz, Paruthiyil et al. (2023). mBio. PMID: 38085102.

    dantaslab/2023_Blake_TrEAT-PREVENT-TD’s past year of commit activity
    Shell 0 1 0 0 Updated Apr 22, 2025
  • ICUSink Public

    Scripts used for analysis in the ICU Sink project.

    dantaslab/ICUSink’s past year of commit activity
    Python 0 0 0 0 Updated Mar 13, 2025
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