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| @property | ||
| def length(self) -> int: | ||
| """The total length of this transcript, summing all exon lengths (includes UTRs).""" |
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introns are part of a transcript... are we conflating this with transcriptome mrna?
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@gkaur can you comment on this?
The original request:
Currently, transcript length is calculated by iterating over the exons, computing the difference between each exon’s start and end positions, and summing those values. It would be much easier if this was recalculated and stored for each transcript.
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I was hoping to capture post processed transcript length based on exons and cdss components only
| return sum(len(exon) for exon in self.exons) | ||
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| @property | ||
| def length_cds(self) -> int: |
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I feel like the naming will be confusing in code.
eg.
len(trans.cdss)
vs
trans.length_cds
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That's a reasonable concern. I'm coming up empty trying to think of a clearer alternative.
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How about .exonic_length and .coding_length?
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