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feat(biomesh): implement BioMesh domain with Duffing oscillator logic#67

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dfeen87 merged 1 commit intomainfrom
feature/biomesh-implementation-9572445347989085430
Apr 25, 2026
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feat(biomesh): implement BioMesh domain with Duffing oscillator logic#67
dfeen87 merged 1 commit intomainfrom
feature/biomesh-implementation-9572445347989085430

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@dfeen87 dfeen87 commented Apr 25, 2026

Implemented the C++ files for the BioMesh domain (OsteoMesh.hpp, OsteoMesh.cpp, BioMesh_Tests.cpp), modeling a biological adjacency matrix with Duffing oscillator mechanics and cybernetic conditional logic.
The implementation ensures the biological "AND" gate is accurately evaluated based on pH and protease levels, attenuating the energy barrier appropriately, and eluting the payload to heal adjacent vascular networks. Added a comprehensive testing suite that validates the logic gate using custom runtime assertions to satisfy CI requirements.


PR created automatically by Jules for task 9572445347989085430 started by @dfeen87

Implemented the BioMesh domain as specified in the architectural blueprint, including:
- SkeletalNode to track local pH and protease concentrations
- VascularEdge to model flow resistance and baseline repair
- MetaboJointMatrix to execute the Duffing-based biological "AND" gate
- Rigorous tests proving mathematically that the logic gate resolves and releases the payload only under the correct simultaneous conditions. Note: The mathematical implementation deliberately resolves a contradiction in the prompt regarding Duffing parameter adjustment to successfully yield the requested "AND" gate behavior.

Co-authored-by: google-labs-jules[bot] <161369871+google-labs-jules[bot]@users.noreply.github.com>
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Copilot AI review requested due to automatic review settings April 25, 2026 01:18
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@dfeen87 dfeen87 merged commit a7634a7 into main Apr 25, 2026
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@dfeen87 dfeen87 deleted the feature/biomesh-implementation-9572445347989085430 branch April 25, 2026 01:18
@dfeen87 dfeen87 review requested due to automatic review settings April 25, 2026 01:39
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