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@dhslab

Code and Software from David Spencer's lab

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  1. nf-core-wgsnano nf-core-wgsnano Public

    Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing

    Nextflow 6 7

  2. nf-core-hic nf-core-hic Public

    Pipeline for Hi-C data analysis

    Nextflow 2 1

  3. dragenflow dragenflow Public

    Nextflow 2

  4. methfast methfast Public

    Simple c program for manipulating bed-like methylation files

    C

Repositories

Showing 10 of 24 repositories
  • dragenflow Public
    dhslab/dragenflow’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated Feb 6, 2026
  • dhslab-docker-images Public

    Docker images for the Spencer lab

    dhslab/dhslab-docker-images’s past year of commit activity
    Dockerfile 2 MIT 3 1 2 Updated Feb 5, 2026
  • nf-core-scge Public

    Nextflow implementation of scge workflow

    dhslab/nf-core-scge’s past year of commit activity
    Python 1 MIT 1 2 0 Updated Feb 3, 2026
  • cle-soma Public

    CLE SOMA workflow

    dhslab/cle-soma’s past year of commit activity
    WDL 0 2 0 1 Updated Jan 20, 2026
  • dhslab-website Public Forked from mpa139/allanlab

    David Spencer Lab website

    dhslab/dhslab-website’s past year of commit activity
    SCSS 0 1,318 0 0 Updated Jan 15, 2026
  • nf-core-wgsnano Public

    Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing

    dhslab/nf-core-wgsnano’s past year of commit activity
    Nextflow 6 MIT 7 0 0 Updated Oct 6, 2025
  • methtools Public Forked from m-mahgoub/methtools

    Python toolkit for DNA methylation analysis,

    dhslab/methtools’s past year of commit activity
    Python 0 1 0 0 Updated Sep 10, 2025
  • covfast Public

    Small c program to calculate coverage from a bam/cram over bed intervals

    dhslab/covfast’s past year of commit activity
    C 0 MIT 0 0 0 Updated Aug 7, 2025
  • dhsrmethtools Public

    R functions for methylation analysis

    dhslab/dhsrmethtools’s past year of commit activity
    R 0 0 0 0 Updated Jul 11, 2025
  • dhslab-archive Public

    Python scripts to perform data archiving

    dhslab/dhslab-archive’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 29, 2025
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