This repository contains code and data used to generate the qvalue plot for Fig6

For each subpanel, e.g. Figure 6A, 6B, and so forth, go into each subfolder and follow the instructions. ####Files: go_qval.tsv contains the qvalues from the random forest analysis over all the markers of cross 1.
qqvall_g.csv contains the positions of all the markers along the linkage map.
goTrait.tsv contains all the phenotypes for all the individuals in the cross.
m_selectedG.csv and f_selectedG.csv are the genotypes and surv phenotypes for the peak markers.