Update dev#1

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beatrizsavinhas wants to merge 90 commits intoeliottBo:add-collecthsmetricsfrom

Commits on Apr 30, 2025

Template update for nf-core/tools version 3.2.1
nf-core-bot
committed

Commits on Jun 3, 2025

Template update for nf-core/tools version 3.3.1
nf-core-bot
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Commits on Jul 8, 2025

Template update for nf-core/tools version 3.3.2
nf-core-bot
committed

Commits on Oct 1, 2025

added picard tools
Agrima Bhatt
committed

Commits on Oct 2, 2025

Commits on Oct 14, 2025

Added bwa_index parameter
Agrima Bhatt
committed
updated process paramters for modules
Agrima Bhatt
committed

Commits on Oct 16, 2025

Template update for nf-core/tools version 3.4.1
nf-core-bot
committed

Commits on Oct 25, 2025

Merge branch 'dev' into picard_tools_dev
agrima2010
authored
Update timestamp in PromethION test snapshot
agrima2010
authored
Update MiSeq.main.nf.test.snap
agrima2010
authored
ss updated

Agrima Bhatt
authored and
Agrima Bhatt
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Updated modules.json

Agrima Bhatt
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Agrima Bhatt
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updated

Agrima Bhatt
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Agrima Bhatt
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Commits on Oct 27, 2025

ss updated
Agrima Bhatt
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Update conf/modules.config

agrima2010
and
ramprasadn
authored
Update conf/modules.config

agrima2010
and
ramprasadn
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Update conf/modules.config

agrima2010
and
ramprasadn
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Update workflows/seqinspector.nf

agrima2010
and
ramprasadn
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Update workflows/seqinspector.nf

agrima2010
and
ramprasadn
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Update workflows/seqinspector.nf

agrima2010
and
ramprasadn
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Update workflows/seqinspector.nf

agrima2010
and
ramprasadn
authored
Update workflows/seqinspector.nf

agrima2010
and
ramprasadn
authored

Commits on Oct 28, 2025

updated ss

Agrima Bhatt
authored and
Agrima Bhatt
committed
ss updated

Agrima Bhatt
authored and
Agrima Bhatt
committed

Commits on Nov 7, 2025

Commits on Nov 18, 2025

.bai files in the same folder as bam files
agrima2010
authored

Commits on Nov 20, 2025