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52 changes: 0 additions & 52 deletions .github/workflows/ci.yml

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7 changes: 1 addition & 6 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -35,9 +35,4 @@ logs/

# Sphinx build output and autosummary stubs (regenerated at build time)
docs/build/
docs/source/_autosummary/
# Test / coverage artifacts
.coverage
coverage.xml
htmlcov/
.pytest_cache/
docs/source/_autosummary/
2 changes: 1 addition & 1 deletion graphtoolbox/data/preprocessing.py
Original file line number Diff line number Diff line change
Expand Up @@ -88,5 +88,5 @@ def extract_dummies(df: pd.DataFrame, var_names: np.ndarray) -> pd.DataFrame:
new_df = df.copy()
list_to_concat = [new_df] + [pd.get_dummies(new_df[var_name], prefix=var_name, drop_first=True, dtype=float) for var_name in var_names]
new_df = pd.concat(list_to_concat, axis=1)
new_df = new_df.drop(columns=var_names)
new_df = new_df.drop(columns=var_names, axis=1)
return new_df
7 changes: 2 additions & 5 deletions pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -29,6 +29,7 @@ dependencies = [
"torch-geometric",
"tqdm",
"cvxopt",
"basemap",
"optuna",
"optuna-dashboard",
"jupyter",
Expand All @@ -47,11 +48,7 @@ include = ["graphtoolbox*"]


[project.optional-dependencies]
# Geographic-map figures only. Basemap is deprecated and lacks wheels for every
# Python version, so it is kept out of the core dependencies; install with
# `pip install GraphToolbox[maps]` when you need those plots.
maps = ["basemap"]
dev = ["pytest", "pytest-cov", "black", "flake8", "mypy"]
dev = ["pytest", "black", "flake8", "mypy"]
docs = [
"sphinx",
"sphinx-rtd-theme",
Expand Down
34 changes: 0 additions & 34 deletions tests/test_aggregation.py

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37 changes: 0 additions & 37 deletions tests/test_extra_models.py

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75 changes: 0 additions & 75 deletions tests/test_helpers.py

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20 changes: 0 additions & 20 deletions tests/test_import.py

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132 changes: 0 additions & 132 deletions tests/test_integration_pipeline.py

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