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a little text #2

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added a little text regarding the creation of a child container.
abelew Oct 19, 2023
06ca74d
Merge branch 'elsayed-lab:main' into main
abelew May 14, 2024
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20 changes: 20 additions & 0 deletions README.md
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Expand Up @@ -37,6 +37,26 @@ make hpgltools.sif
sudo -E singularity build hpgltools.sif hpgltools.yml
```

# Creating a child container

I imagine that the primary use-case of this repository is to use it as
the parent of a container which contains a set of actual analyses.
Therefore, there is an image available at:

https://cloud.sylabs.io/library/abelew/hpgltools/hpgltools.sif

This may be used by another container by setting the child container's
bootstrap section to some variant of the following:

```{yml}
Bootstrap: library
From: abelew/hpgltools/hpgltools.sif:sha256.8d35a6e57ac2148acde403611a81d941b526e5435d970933e97f241f2341f168
```

The resulting container's runscript ideally is basically ready for an
arbitrary set of analyses once the input sample sheet and data files
are provided.

# Generating the html/rda/excel output files

One of the neat things about singularity is the fact that one may just
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