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166 crash in wps command valueerror negative dimensions are not allowed#168

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jamesli124 merged 4 commits intomainfrom
166-crash-in-wps-command-valueerror-negative-dimensions-are-not-allowed
Mar 9, 2026
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166 crash in wps command valueerror negative dimensions are not allowed#168
jamesli124 merged 4 commits intomainfrom
166-crash-in-wps-command-valueerror-negative-dimensions-are-not-allowed

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  • fixed issue by clamping stop to chromosome size in multi_wps, skipping degenerate intervals after trimming overlaps, and adding check to wps for stop <= start.
  • Updated changelog
  • Include python 3.13 to Github CI testing

    - clamp `stop` to chromosome size in `multi_wps`
    - skip degenerate intervals after trimming overlaps in `multi_wps`
    - `wps` checks for `stop <= start` and issues a warning
@jamesli124 jamesli124 linked an issue Mar 4, 2026 that may be closed by this pull request
…age is used in frag_length_bins

    -  when an interval with no coverage is received, frag_length_bins will return two empty arrays and issue a warning
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BTTME!

@jamesli124 jamesli124 merged commit e2db167 into main Mar 9, 2026
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@jamesli124 jamesli124 deleted the 166-crash-in-wps-command-valueerror-negative-dimensions-are-not-allowed branch March 9, 2026 01:53
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Crash in wps command: ValueError: negative dimensions are not allowed

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