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Updated troubleshooting documentation with description of package incompatibility issue and the updated requirements to fix it
Co-authored-by: Ethan Xia <ex36@belafonte.infosci.cornell.edu> Co-authored-by: seanzhangkx8 <106214464+seanzhangkx8@users.noreply.github.com>
changed setup.py to require ruff and updated pyproject.toml
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