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docs: regenerate nf-fgsv example for fg-labs org move#11

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znorgaard:update-nf-fgsv-example
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docs: regenerate nf-fgsv example for fg-labs org move#11
znorgaard wants to merge 1 commit into
ewels:mainfrom
znorgaard:update-nf-fgsv-example

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@znorgaard znorgaard commented May 27, 2026

The nf-fgsv repository moved from the fulcrumgenomics org to fg-labs, so the example's repository and source links pointed at the old (now-redirected) location.

This PR regenerates the example with current nf-docs against fg-labs/nf-fgsv so the links are correct and the output reflects the pipeline's current docs (typed records, expanded --input schema, workflow docstring).

Note: we lost outputs, looks like no support for the record outputs yet.

The nf-fgsv repository moved from the `fulcrumgenomics` org to `fg-labs`, so
the example's repository and source links pointed at the old (now-redirected)
location. Regenerate the example with current nf-docs against
`fg-labs/nf-fgsv` so the links are correct and the output reflects the
pipeline's current docs (typed records, expanded `--input` schema, workflow
docstring). The `fulcrumgenomics/fgsv` tool links are unchanged — that
repository did not move.
@znorgaard znorgaard force-pushed the update-nf-fgsv-example branch from 72eea0d to 5f9a3f2 Compare May 27, 2026 21:24
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