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Abort program if a subprocess fails#63

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jb-adams wants to merge 3 commits into
ga4gh:developfrom
jb-adams:feature/60-abort-if-subprocess-fails
Open

Abort program if a subprocess fails#63
jb-adams wants to merge 3 commits into
ga4gh:developfrom
jb-adams:feature/60-abort-if-subprocess-fails

further abstraction of common commandline options for subprocesses

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