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Pull requests: galaxyproject/tools-iuc

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Pull requests list

Fix empty output issue with Samtools markdup
#7741 opened Mar 4, 2026 by Delphine-L Loading…
5 tasks
1
Seqkit grep - Update & Change pattern file format
#7740 opened Mar 4, 2026 by RZ9082 Loading…
2 of 5 tasks
1
Initial commit for ANGSD and contamination tools
#7739 opened Mar 3, 2026 by mertydn Loading…
Adding a new tool: Foldtree
#7738 opened Mar 3, 2026 by nromashchenko Loading…
3 of 5 tasks
pysradb metadata subcommand implementation
#7737 opened Mar 2, 2026 by gdefazio Loading…
2 tasks
1
Updating tools/seqkit from version 2.12.0 to 2.13.0
#7734 opened Mar 2, 2026 by gxydevbot Loading…
Updating tools/pgxRpi from version 1.2.0 to 1.6.0
#7732 opened Mar 2, 2026 by gxydevbot Loading…
@SaimMomin12
1
Add mtnucratio tool
#7731 opened Mar 1, 2026 by mertydn Loading…
4 tasks done
12
Add Squidpy
#7730 opened Feb 28, 2026 by nilchia • Draft
3 of 5 tasks
fixes for ncbi_entrez_eutils
#7728 opened Feb 26, 2026 by bernt-matthias Loading…
3 of 5 tasks
8
WIP Picrust2 bump
#7727 opened Feb 26, 2026 by bernt-matthias • Draft
5 tasks
Add enzbert tool and data manager
#7724 opened Feb 24, 2026 by LeCorreP Loading…
3 of 5 tasks
9
samtools stats: add test with reference genome
#7720 opened Feb 23, 2026 by bernt-matthias Loading…
3 of 5 tasks
Updates for pysradb
#7719 opened Feb 23, 2026 by bernt-matthias Loading…
3 of 5 tasks
Updating tools/metamdbg from version 1.3 to 1.3.1
#7715 opened Feb 23, 2026 by gxydevbot Loading…
Updating tools/meningotype from version 0.8.5 to 0.8.6b
#7714 opened Feb 23, 2026 by gxydevbot Loading…
Updating tools/bowtie2 from version 2.5.4 to 2.5.5 skip-url-check Allow IUC members to skip the URL linter in PR reviews.
#7713 opened Feb 23, 2026 by gxydevbot Loading…
Add CRAQ
#7712 opened Feb 22, 2026 by Smkingsize Loading…
3 of 5 tasks
2
Add MMseqs2 easy-* wrappers and refactor shared macros tool update/enhancement
#7711 opened Feb 22, 2026 by nekrut Loading…
3 of 5 tasks
15
[WIP] Bump dada2
#7706 opened Feb 19, 2026 by bernt-matthias Loading…
3 of 5 tasks
Add Preseq tool wrapper v3.2.0
#7701 opened Feb 18, 2026 by mertydn Loading…
3 tasks done
22
Update Obitools toolsuite to Obitools4
#7700 opened Feb 18, 2026 by kpayet26 • Draft
3 of 5 tasks
19
Simtext - Move credentials to reqs
#7699 opened Feb 17, 2026 by RZ9082 Loading…
2 of 5 tasks
@RZ9082
7
Updating tools/ncbi_datasets from version 18.14.0 to 18.18.0
#7690 opened Feb 16, 2026 by gxydevbot Loading…
2
Idr_download - Move credentials to reqs
#7683 opened Feb 16, 2026 by RZ9082 Loading…
2 of 5 tasks
@RZ9082
2
ProTip! What’s not been updated in a month: updated:<2026-02-04.