Skip to content

Earth 101: Major update of the introductory tutorial#6792

Open
Marie59 wants to merge 63 commits into
galaxyproject:mainfrom
Marie59:earth_101
Open

Earth 101: Major update of the introductory tutorial#6792
Marie59 wants to merge 63 commits into
galaxyproject:mainfrom
Marie59:earth_101

Conversation

@Marie59
Copy link
Copy Markdown
Collaborator

@Marie59 Marie59 commented Apr 15, 2026

Hi all,

Some time ago I did a training to discover what was available on Galaxy for earth system data.
I did a major update to try and do something more digest hopefully for the users.
I kept the main Earth system introduction I added the links it has with climate and ecology plus i separated into:

  • ocean
  • atmosphere
  • biodiversity
  • land
  • geosphere

What do you think of it ? It surely needs some big improvements still @yvanlebras @PaulineSGN @annefou @jeromedetoc
I'm going to check also with our Aquainfra friends if they want to add stuff here too

Marie59 and others added 21 commits April 15, 2026 11:35
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
@MarkusKonk
Copy link
Copy Markdown

Ah ok, if you're planning to use the *sphere scheme, it makes sense to use hydrosphere instead of marine & freshwater

@Marie59
Copy link
Copy Markdown
Collaborator Author

Marie59 commented Apr 16, 2026

Ah ok, if you're planning to use the *sphere scheme, it makes sense to use hydrosphere instead of marine & freshwater

Cool then I'll change some stuff in the teasing of this part to speak about marine and freshwater and in the Hydrosphere page I'll make a dedicated section to your subdomain ?

@MarkusKonk
Copy link
Copy Markdown

Ah ok, if you're planning to use the *sphere scheme, it makes sense to use hydrosphere instead of marine & freshwater

Cool then I'll change some stuff in the teasing of this part to speak about marine and freshwater and in the Hydrosphere page I'll make a dedicated section to your subdomain ?

Sounds good!

Comment thread GRANTS.yaml Outdated
avatar: "/training-material/assets/images/gaia_data.png"
url: https://www.gaia-data.org/
funding_id: "21-ESRE-0010"
funding_database: ANR- 21-ESRE-0010
Copy link
Copy Markdown
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@Marie59 I need to add ANR to list of supporting funding databases to support. Is there a portal where grants can be looked up by their ID?

Copy link
Copy Markdown
Collaborator Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@yvanlebras or @PaulineSGN would you have the answer to this ?

Copy link
Copy Markdown
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Hi Saskia, Marie, there is the anr.fr website, but not really a dedicated place where we can search for such "21-ESRE-0010" id as far as I know

Copy link
Copy Markdown
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Copy link
Copy Markdown
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I tried to modify it specifying OpenAIRE as database (who seems to me relevant for others grants ID) and modyfying the funding ID as presented in OpenAIRE

Copy link
Copy Markdown
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thanks @yvanlebras is there an openaire URL that can be constructed using this ID to lead to a project page?

I also found this link: https://anr.fr/ProjetIA-21-ESRE-0010

if we change the id to ProjetIA-21-ESRE-0010 then we can automatically create the url by putting https://anr.fr/ in front of the ID, then it would hopefully work more easily for other ANR grants as well. What do you think?

Copy link
Copy Markdown
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thnak you Saskia! Unfortunately, the ANR URL is not something we can reuse as it is not really using the project ID for the URL (amazing ;) ). And on OpenAire, don't find something "clever"... only the URL with serach and the horrible id...

Copy link
Copy Markdown
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@yvanlebras ok, then maybe I will just add support for providing a full url for anr rather than constructing it cleverly

@shiltemann
Copy link
Copy Markdown
Member

ok, pushed a solution for ANR funding ids:

funding_id: "ProjetIA-21-ESRE-0010"
funding_id_display: "21-ESRE-0010"
funding_database: anr

funding_id is used to construct the link to the project page on ANR website, funding_id_display is shown to users on the various GTN pages. good?

@yvanlebras
Copy link
Copy Markdown
Collaborator

Good to me! Thank you Saskia !

@shiltemann
Copy link
Copy Markdown
Member

@Marie59 have you tried making the "where to start" tutorials into slide decks? They don't have any hands-on parts, and mostly consist of small sections that feel like they would fit nicely on slides, what do you think?

secondly, maybe consider a subtopic for them? They end up at the bottom under "other", but probably nice to have them at the top?

@Marie59
Copy link
Copy Markdown
Collaborator Author

Marie59 commented Apr 30, 2026

I do like the view of markdown of the hands-on but yes maybe slides would be more adapted.

Yes a subtopic would be nice ! I'll add that !
I'm stilll waiting for some feedback of the community.

@shiltemann
Copy link
Copy Markdown
Member

@Marie59 If you prefer the look of the tutorial format then that is also fine for me, just raise it as something to think about :)

I fixed a merge conflict after @yvanlebras's PR that already copied some of these changes, so please pull for the latest version :)

@Marie59
Copy link
Copy Markdown
Collaborator Author

Marie59 commented May 18, 2026

@Marie59 If you prefer the look of the tutorial format then that is also fine for me, just raise it as something to think about :)

I fixed a merge conflict after @yvanlebras's PR that already copied some of these changes, so please pull for the latest version :)

Still thinking about it I am trying to bring other people than me to collaborate here for earth science stuffs so this could take a bit of time ;)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants