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55 changes: 55 additions & 0 deletions src/cdm_reader_mapper/common/iterators.py
Original file line number Diff line number Diff line change
Expand Up @@ -768,6 +768,59 @@ def _make_parquet_reader(d: TemporaryDirectory[str], t: type, s: str | None) ->
return tuple(final_iterators + output_non_data)


def _restore_columns(item: Any) -> Any:
"""
Restore columns from string literals if `item` is a pandas DataFrame or Series.

Parameters
----------
item : Any
Object to restore.

Returns
-------
Any
Restored object.
"""

def _literal_eval(column: Any) -> Any:
"""
Evaluate a string literal if possible.

Parameters
----------
column : Any
Column that is possibly a string literal.

Returns
-------
Any
Evaluated column.
"""
if not isinstance(column, str):
return column
try:
from ast import literal_eval

return literal_eval(column)
except (ValueError, SyntaxError):
return column

if isinstance(item, pd.DataFrame):
columns = item.columns
new_columns = []
for column in columns:
column = _literal_eval(column)
new_columns.append(column)

item.columns = new_columns

if isinstance(item, pd.Series):
item.name = _literal_eval(item.name)

return item


def _process_chunks(
readers: list[ParquetStreamReader],
func: Callable[..., Any],
Expand Down Expand Up @@ -835,6 +888,8 @@ def _process_chunks(
for items in zip(*readers, strict=True):
_validate_chunk(items, requested_types)

items = tuple([_restore_columns(item) for item in items])

result = func(*items, *static_args, **static_kwargs)
data, meta = _process_result(result, requested_types, non_data_output, chunk_counter)

Expand Down
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