docker: expose MSA CPU flags#1131
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run_alphafold.py already supports jackhmmer_n_cpu, hmmsearch_n_cpu, and hhsearch_n_cpu, but docker/run_docker.py does not expose or forward those options.\n\nAdd optional pass-through flags to the Docker launcher. When the flags are unset, no extra arguments are added and run_alphafold.py keeps using its existing defaults.\n\nFixes google-deepmind#801.
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Fixes #801.
run_alphafold.pyalready supports--jackhmmer_n_cpu,--hmmsearch_n_cpu, and--hhsearch_n_cpu, butdocker/run_docker.pydoes not expose or forward those options.Add optional pass-through flags to the Docker launcher. When the flags are unset, no extra arguments are added and
run_alphafold.pykeeps using its existing defaults.Validation:
git diff --checkpython -m py_compile docker/run_docker.pypython -m pip install -r docker/requirements.txtpython docker/run_docker.py --helpshortoutput and verified the new flags are listedNot performed: