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158 Commits
GI
GI
 
 
R
R
 
 
annotation
annotation
 
 
assembly
assembly
 
 
bayestraits
bayestraits
 
 
data
data
 
 
direct_structure
direct_structure
 
 
effectors
effectors
 
 
install_progs
install_progs
 
 
minion
minion
 
 
miscellaneous_scripts
miscellaneous_scripts
 
 
orthomcl
orthomcl
 
 
pangenomics
pangenomics
 
 
phylogenetics
phylogenetics
 
 
ranger-dtl
ranger-dtl
 
 
README.md
README.md
 
 
circlator instructions
circlator instructions
 
 
circos_pipeline
circos_pipeline
 
 
extract_seq.sh
extract_seq.sh
 
 
mauve_alignments
mauve_alignments
 
 
read_coverage_commands
read_coverage_commands
 
 
sub_alien.sh
sub_alien.sh
 
 
sub_checkm.sh
sub_checkm.sh
 
 
sub_geneconv.sh
sub_geneconv.sh
 
 
sub_realphy.sh
sub_realphy.sh
 
 

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Comparative genomics of Pseudomonas syringae on cherry and plum

Repository for the commands used in comparative analysis including genome assembly, orthomcl, phylogenetics, BayesTraits, geneconv, Ranger-DTL, effector identification

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