Python version of bpRNA (partially working)#3
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olive004 wants to merge 2 commits intohendrixlab:masterfrom
Open
Python version of bpRNA (partially working)#3olive004 wants to merge 2 commits intohendrixlab:masterfrom
olive004 wants to merge 2 commits intohendrixlab:masterfrom
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Python rewrite of bpRNA - not fully functional, but most of the way there. Requires some more comparing of the original bpRNA functionality to fit the intended behaviour accurately.
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Hi, @olive004! Great work! Did you ever finish this port? Would love to have a python version of bpRNA that doesn't require perl and Graph.pm. |
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Hey @olive004, nice job! Could you elaborate on what needs to be done to make this fully functional? Could we perhaps help with that? |
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For those who are interested in a Python version of the bpRNA algorithm, we are providing one in MultiMolecule Note that the implementation is not identical, we use a mathematically equivalent approach and should be generally faster than standard bpRNA implementation. We have several tests and we ran a parity test over 10m sequences to verify that. |
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Python rewrite of bpRNA - not fully functional, but most of the way there. Requires some more comparing of the original bpRNA functionality to fit the intended behaviour accurately.