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1. ZEPPI ZEPPI Public

   A method designed for proteome-scale sequence-based evaluation of protein-protein interfaces as defined by structural models of protein-protein interaction complexes.

   Python 4 2

2. SURFace-Algorithms SURFace-Algorithms Public

   SURFace algorithms are programs that calculate solvent accessible surface area and curvature corrected solvent accessible surface area.

3. PRD_SLiM_2_PDB PRD_SLiM_2_PDB Public

   Validation of PRD-SLiM interactions predicted by PrePPI-SLiM using the Propedia database of receptor-peptide complexes.

   Python

4. BayesianModel-for-Ecoli-PPI BayesianModel-for-Ecoli-PPI Public

   A Bayesian model that integrates structural modeling and protein-language model to calculate the E. coli protein-protein interactome

   Jupyter Notebook 1

5. PrePPI_SLiM PrePPI_SLiM Public

   This pipeline predicts protein-protein interactions mediated by peptidic motifs.

   Perl