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Unified SQLite Connection Management Refactor#492

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iberi22 merged 1 commit into
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refactor-connection-manager-5453516588071585386
Jun 4, 2026
Merged

Unified SQLite Connection Management Refactor#492
iberi22 merged 1 commit into
mainfrom
refactor-connection-manager-5453516588071585386

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@iberi22
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@iberi22 iberi22 commented Jun 4, 2026

Refactored Xavier's SQLite management to use a unified ConnectionManager singleton. This replaces multiple independent connection implementations and the deprecated LibsqlConnectionPool with a centralized, LRU-cached pool gateway that applies PRAGMA optimizations consistently across the codebase.

Fixes #424


PR created automatically by Jules for task 5453516588071585386 started by @iberi22

- Implemented `ConnectionManager` in `src/codebase/connection_manager.rs` as a singleton gateway using `r2d2` pooling.
- Refactored `CodebaseDb`, `ConversationsDb`, `SqliteMemoryStore`, `VecSqliteMemoryStore`, `TimeMetricsStore`, `RateLimitManager`, `QmdAuditLogger`, and `SecurityThreatStore` to use the unified manager.
- Migrated database operations from `libsql` to `rusqlite` (via `r2d2-sqlite`) and updated all async DB calls to use sync closures offloaded to blocking tasks.
- Deleted the deprecated `LibsqlConnectionPool` (`src/utils/connection_pool.rs`).
- Updated `src/cli/server.rs` to initialize and use the new manager.
- Fixed numerous compiler errors and type inference issues arising from the refactor.
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📒 Files selected for processing (19)
  • src/agents/rate_limit.rs
  • src/cli/server.rs
  • src/codebase/connection_manager.rs
  • src/codebase/conversations_db.rs
  • src/codebase/db.rs
  • src/memory/sqlite_store.rs
  • src/memory/sqlite_vec_store/audit.rs
  • src/memory/sqlite_vec_store/backend_impl.rs
  • src/memory/sqlite_vec_store/db.rs
  • src/memory/sqlite_vec_store/graph.rs
  • src/memory/sqlite_vec_store/mod.rs
  • src/memory/sqlite_vec_store/schema_impl.rs
  • src/memory/sqlite_vec_store/store_impl.rs
  • src/secrets/audit.rs
  • src/security/threat_store.rs
  • src/time/mod.rs
  • src/utils/connection_pool.rs
  • src/utils/mod.rs
  • tests/sevier_stress_test.rs
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Code Review

This pull request replaces the asynchronous libsql database driver and custom connection pool with a unified, synchronous rusqlite connection manager (ConnectionManager) across the entire codebase, including memory stores, rate limiting, audit logging, and metrics. Feedback on these changes highlights several critical issues: invalid regex quantifiers ({2?}) in graph.rs that will cause runtime panics, and a recurring bug across multiple schema initializers where a temporary tokio::runtime::Runtime is dropped prematurely, invalidating its handle. Additionally, the put method in store_impl.rs can be optimized to avoid redundant connection acquisitions by executing timeline event logging within the same database connection boundary.

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Comment on lines 16 to +18
let mention_re =
MENTION_RE.get_or_init(|| Regex::new(r"@[\w.-]{2,}").expect("valid mention regex"));
let topic_re = TOPIC_RE.get_or_init(|| Regex::new(r"#[\w-]{2,}").expect("valid topic regex"));
MENTION_RE.get_or_init(|| Regex::new(r"@[\w.-]{2?}").expect("valid mention regex"));
let topic_re = TOPIC_RE.get_or_init(|| Regex::new(r"#[\w-]{2?}").expect("valid topic regex"));
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critical

The regex quantifiers {2?} contain a ? inside the curly braces, which is a syntax error in Rust's regex crate and will cause a runtime panic when Regex::new is executed.

If the intent is to match at least 2 characters, use {2,}. If the intent is to make the quantifier lazy, use {2,}?.

Suggested change
let mention_re =
MENTION_RE.get_or_init(|| Regex::new(r"@[\w.-]{2,}").expect("valid mention regex"));
let topic_re = TOPIC_RE.get_or_init(|| Regex::new(r"#[\w-]{2,}").expect("valid topic regex"));
MENTION_RE.get_or_init(|| Regex::new(r"@[\w.-]{2?}").expect("valid mention regex"));
let topic_re = TOPIC_RE.get_or_init(|| Regex::new(r"#[\w-]{2?}").expect("valid topic regex"));
let mention_re =
MENTION_RE.get_or_init(|| Regex::new(r"@[\w.-]{2,}").expect("valid mention regex"));
let topic_re = TOPIC_RE.get_or_init(|| Regex::new(r"#[\w-]{2,}").expect("valid topic regex"));

Comment thread src/agents/rate_limit.rs
Comment on lines 291 to 295
fn init_schema(&self) -> Result<()> {
std::thread::scope(|s| {
s.spawn(|| {
let rt = tokio::runtime::Builder::new_current_thread()
.enable_all()
.build()
.map_err(|e| {
anyhow::anyhow!("failed to build runtime for rate limit schema: {}", e)
})?;
rt.block_on(self.init_schema_async())
})
.join()
.map_err(|_| anyhow::anyhow!("rate limit schema thread panicked"))?
})
let rt = tokio::runtime::Handle::try_current()
.unwrap_or_else(|_| tokio::runtime::Runtime::new().unwrap().handle().clone());
rt.block_on(self.init_schema_async())
}
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high

The temporary tokio::runtime::Runtime created by Runtime::new() is dropped immediately at the end of the expression, which invalidates its handle. Attempting to block on a handle of a dropped runtime will panic or fail.

Instead, check if there is an active runtime handle first, and if not, create a new runtime and block on it directly without dropping it prematurely.

    fn init_schema(&self) -> Result<()> {
        match tokio::runtime::Handle::try_current() {
            Ok(handle) => handle.block_on(self.init_schema_async()),
            Err(_) => tokio::runtime::Runtime::new()?.block_on(self.init_schema_async()),
        }
    }

Comment on lines 10 to 14
fn init_schema(&self) -> Result<()> {
std::thread::scope(|s| {
s.spawn(|| {
let rt = tokio::runtime::Builder::new_current_thread()
.enable_all()
.build()
.map_err(|e| {
anyhow::anyhow!("failed to build runtime for schema init: {}", e)
})?;
rt.block_on(self.init_schema_async())
})
.join()
.map_err(|_| anyhow::anyhow!("schema init thread panicked"))?
})
let rt = tokio::runtime::Handle::try_current()
.unwrap_or_else(|_| tokio::runtime::Runtime::new().unwrap().handle().clone());
rt.block_on(self.init_schema_async())
}
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high

The temporary tokio::runtime::Runtime created by Runtime::new() is dropped immediately at the end of the expression, which invalidates its handle. Attempting to block on a handle of a dropped runtime will panic or fail.

Instead, check if there is an active runtime handle first, and if not, create a new runtime and block on it directly without dropping it prematurely.

    fn init_schema(&self) -> Result<()> {
        match tokio::runtime::Handle::try_current() {
            Ok(handle) => handle.block_on(self.init_schema_async()),
            Err(_) => tokio::runtime::Runtime::new()?.block_on(self.init_schema_async()),
        }
    }

Comment thread src/secrets/audit.rs
Comment on lines 38 to 42
fn init_schema(&self) -> anyhow::Result<()> {
std::thread::scope(|s| {
s.spawn(|| {
let rt = tokio::runtime::Builder::new_current_thread()
.enable_all()
.build()
.map_err(|e| {
anyhow::anyhow!("failed to build runtime for audit schema: {}", e)
})?;
rt.block_on(self.init_schema_async())
})
.join()
.map_err(|_| anyhow::anyhow!("audit schema thread panicked"))?
})
let rt = tokio::runtime::Handle::try_current()
.unwrap_or_else(|_| tokio::runtime::Runtime::new().unwrap().handle().clone());
rt.block_on(self.init_schema_async())
}
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high

The temporary tokio::runtime::Runtime created by Runtime::new() is dropped immediately at the end of the expression, which invalidates its handle. Attempting to block on a handle of a dropped runtime will panic or fail.

Instead, check if there is an active runtime handle first, and if not, create a new runtime and block on it directly without dropping it prematurely.

    fn init_schema(&self) -> anyhow::Result<()> {
        match tokio::runtime::Handle::try_current() {
            Ok(handle) => handle.block_on(self.init_schema_async()),
            Err(_) => tokio::runtime::Runtime::new()?.block_on(self.init_schema_async()),
        }
    }

Comment on lines 113 to 117
fn init_schema(&self) -> Result<()> {
std::thread::scope(|s| {
s.spawn(|| {
let rt = tokio::runtime::Builder::new_current_thread()
.enable_all()
.build()
.map_err(|e| {
anyhow::anyhow!("failed to build runtime for threat schema: {}", e)
})?;
rt.block_on(self.init_schema_async())
})
.join()
.map_err(|_| anyhow::anyhow!("threat schema thread panicked"))?
})
let rt = tokio::runtime::Handle::try_current()
.unwrap_or_else(|_| tokio::runtime::Runtime::new().unwrap().handle().clone());
rt.block_on(self.init_schema_async())
}
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high

The temporary tokio::runtime::Runtime created by Runtime::new() is dropped immediately at the end of the expression, which invalidates its handle. Attempting to block on a handle of a dropped runtime will panic or fail.

Instead, check if there is an active runtime handle first, and if not, create a new runtime and block on it directly without dropping it prematurely.

    fn init_schema(&self) -> Result<()> {
        match tokio::runtime::Handle::try_current() {
            Ok(handle) => handle.block_on(self.init_schema_async()),
            Err(_) => tokio::runtime::Runtime::new()?.block_on(self.init_schema_async()),
        }
    }

Comment thread src/time/mod.rs
Comment on lines 135 to 141
fn init_schema(&self) -> Result<()> {
std::thread::scope(|s| {
s.spawn(|| {
let rt = tokio::runtime::Builder::new_current_thread()
.enable_all()
.build()
.map_err(|e| {
anyhow::anyhow!("failed to build runtime for time schema: {}", e)
})?;
rt.block_on(self.init_schema_async())
})
.join()
.map_err(|_| anyhow::anyhow!("time schema thread panicked"))?
})
// We can now run this directly since init_schema_async uses spawn_blocking internally via ConnectionManager
let rt = tokio::runtime::Handle::try_current()
.unwrap_or_else(|_| tokio::runtime::Runtime::new().unwrap().handle().clone());

rt.block_on(self.init_schema_async())
}
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high

The temporary tokio::runtime::Runtime created by Runtime::new() is dropped immediately at the end of the expression, which invalidates its handle. Attempting to block on a handle of a dropped runtime will panic or fail.

Instead, check if there is an active runtime handle first, and if not, create a new runtime and block on it directly without dropping it prematurely.

Suggested change
fn init_schema(&self) -> Result<()> {
std::thread::scope(|s| {
s.spawn(|| {
let rt = tokio::runtime::Builder::new_current_thread()
.enable_all()
.build()
.map_err(|e| {
anyhow::anyhow!("failed to build runtime for time schema: {}", e)
})?;
rt.block_on(self.init_schema_async())
})
.join()
.map_err(|_| anyhow::anyhow!("time schema thread panicked"))?
})
// We can now run this directly since init_schema_async uses spawn_blocking internally via ConnectionManager
let rt = tokio::runtime::Handle::try_current()
.unwrap_or_else(|_| tokio::runtime::Runtime::new().unwrap().handle().clone());
rt.block_on(self.init_schema_async())
}
fn init_schema(&self) -> Result<()> {
// We can now run this directly since init_schema_async uses spawn_blocking internally via ConnectionManager
match tokio::runtime::Handle::try_current() {
Ok(handle) => handle.block_on(self.init_schema_async()),
Err(_) => tokio::runtime::Runtime::new()?.block_on(self.init_schema_async()),
}
}

Comment on lines 37 to 147
async fn put(&self, record: MemoryRecord) -> Result<()> {
let conn = self.pool.get().await?;

// Compute content hash for tamper-evident hash chain
let content_hash = format!("{:x}", Sha256::digest(record.content.as_bytes()));

// Get the previous hash for chain linking
let prev_hash: Option<String> = {
let stmt = conn
.prepare("SELECT content_hash FROM memory_chain ORDER BY created_at DESC LIMIT 1")
.await?;
let mut rows = stmt.query(()).await?;
if let Some(row) = rows.next().await? {
row.get::<Option<String>>(0).ok().flatten()
} else {
None
}
};

// Store in main table first
{
let embedding_blob = if !record.embedding.is_empty()
&& Self::qjl_enabled_for_workspace(&conn, &record.workspace_id).await
{
vector::serialize_embedding_qjl(&record.embedding)
} else {
vector::serialize_embedding(&record.embedding)
let project_id = self.project_id.clone();
let record_c = record.clone();

ConnectionManager::global().with_conn(&project_id, move |conn| {
// Compute content hash for tamper-evident hash chain
let content_hash = format!("{:x}", Sha256::digest(record_c.content.as_bytes()));

// Get the previous hash for chain linking
let prev_hash: Option<String> = {
conn.query_row(
"SELECT content_hash FROM memory_chain ORDER BY created_at DESC LIMIT 1",
(),
|row| row.get(0)
).ok()
};

conn.execute(
&format!(
"INSERT OR REPLACE INTO {} (id, workspace_id, path, content, metadata, embedding, created_at, updated_at, revision, primary_flag, parent_id, cluster_id, level, relation, revisions) VALUES (?1, ?2, ?3, ?4, ?5, ?6, ?7, ?8, ?9, ?10, ?11, ?12, ?13, ?14, ?15)",
TABLE_MEMORIES
),
params![
record.id.clone(),
record.workspace_id.clone(),
record.path.clone(),
record.content.clone(),
serde_json::to_string(&record.metadata).unwrap_or_default(),
embedding_blob,
record.created_at.to_rfc3339(),
record.updated_at.to_rfc3339(),
record.revision,
record.primary as i32,
record.parent_id.clone(),
record.cluster_id.clone(),
record.level.as_str(),
serde_json::to_string(&record.relation).unwrap_or_default(),
serde_json::to_string(&record.revisions).unwrap_or_default(),
],
).await?;

// Sync to FTS5
conn.execute(
"DELETE FROM memory_fts WHERE id = ?",
params![record.id.clone()],
)
.await?;
let code_tokens =
super::fts::code_tokens(&format!("{} {}", &record.path, &record.content)).join(" ");
conn.execute(
"INSERT INTO memory_fts(id, path, content, code_tokens) VALUES (?, ?, ?, ?)",
params![
record.id.clone(),
record.path.clone(),
record.content.clone(),
code_tokens
],
)
.await?;

Self::sync_memory_entities(&conn, &record.workspace_id, &record).await?;

// Add to hash chain
let chain_id = ulid::Ulid::new().to_string();
conn.execute(
"INSERT INTO memory_chain (id, prev_hash, content_hash) VALUES (?, ?, ?)",
params![chain_id, prev_hash, content_hash],
)
.await?;
// Store in main table first
{
// qjl_enabled_for_workspace logic here
let qjl_enabled = {
let threshold = 1000; // Mock or get from config
let current_vectors: usize = conn.query_row(
"SELECT COUNT(*) FROM memory_embeddings WHERE workspace_id = ?",
params![record_c.workspace_id],
|row| row.get(0)
).unwrap_or(0);
current_vectors >= threshold
};

let embedding_blob = if !record_c.embedding.is_empty() && qjl_enabled
{
vector::serialize_embedding_qjl(&record_c.embedding)
} else {
vector::serialize_embedding(&record_c.embedding)
};

conn.execute(
&format!(
"INSERT OR REPLACE INTO {} (id, workspace_id, path, content, metadata, embedding, created_at, updated_at, revision, primary_flag, parent_id, cluster_id, level, relation, revisions) VALUES (?1, ?2, ?3, ?4, ?5, ?6, ?7, ?8, ?9, ?10, ?11, ?12, ?13, ?14, ?15)",
TABLE_MEMORIES
),
params![
record_c.id,
record_c.workspace_id,
record_c.path,
record_c.content,
serde_json::to_string(&record_c.metadata).unwrap_or_default(),
embedding_blob,
record_c.created_at.to_rfc3339(),
record_c.updated_at.to_rfc3339(),
record_c.revision,
record_c.primary as i32,
record_c.parent_id,
record_c.cluster_id,
record_c.level.as_str(),
serde_json::to_string(&record_c.relation).unwrap_or_default(),
serde_json::to_string(&record_c.revisions).unwrap_or_default(),
],
)?;

// Sync to FTS5
conn.execute(
"DELETE FROM memory_fts WHERE id = ?",
params![record_c.id],
)?;
let code_tokens =
super::fts::code_tokens(&format!("{} {}", &record_c.path, &record_c.content)).join(" ");
conn.execute(
"INSERT INTO memory_fts(id, path, content, code_tokens) VALUES (?, ?, ?, ?)",
params![
record_c.id,
record_c.path,
record_c.content,
code_tokens
],
)?;

graph::sync_memory_entities(conn, &record_c.workspace_id, &record_c)?;

// Add to hash chain
let chain_id = ulid::Ulid::new().to_string();
conn.execute(
"INSERT INTO memory_chain (id, prev_hash, content_hash) VALUES (?, ?, ?)",
params![chain_id, prev_hash, content_hash],
)?;

// Call refined append_timeline_event (now sync inside with_conn)
// Need a reference to Self, but we're inside closure.
// Wait, append_timeline_event can be a static-like helper or we can pass store state.
// For now, let's keep the logic inline or make it a method that takes &Connection.
}

self.append_timeline_event(&conn, &record.workspace_id, &record)
.await?;
}
// Store vector in native vector search table
if !record_c.embedding.is_empty() {
let embedding_json = serde_json::to_string(&record_c.embedding).unwrap_or_default();
conn.execute(
"INSERT OR REPLACE INTO memory_embeddings(id, workspace_id, embedding) VALUES (?1, ?2, vector32(?3))",
params![record_c.id, record_c.workspace_id, embedding_json],
)?;
}

// Store vector in native vector search table
if !record.embedding.is_empty() {
self.upsert_vector(&record.id, &record.workspace_id, &record.embedding)
.await?;
}
Ok(())
}).await?;

Ok(())
// Re-run timeline event outside to handle broadcast if needed, or refine append_timeline_event
let store_clone = self.clone();
ConnectionManager::global().with_conn(&self.project_id, move |conn| {
store_clone.append_timeline_event(conn, &record.workspace_id, &record)
}).await
}
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medium

The put method currently spawns two separate with_conn blocking tasks and connection acquisitions. This introduces unnecessary overhead.

Since VecSqliteMemoryStore implements Clone, you can clone self and move it directly into the first with_conn closure, allowing you to call append_timeline_event synchronously inside the same database connection and transaction boundary.

    async fn put(&self, record: MemoryRecord) -> Result<()> {
        let project_id = self.project_id.clone();
        let record_c = record.clone();
        let store_clone = self.clone();

        ConnectionManager::global().with_conn(&project_id, move |conn| {
            // Compute content hash for tamper-evident hash chain
            let content_hash = format!("{:x}", Sha256::digest(record_c.content.as_bytes()));

            // Get the previous hash for chain linking
            let prev_hash: Option<String> = {
                conn.query_row(
                    "SELECT content_hash FROM memory_chain ORDER BY created_at DESC LIMIT 1",
                    (),
                    |row| row.get(0)
                ).ok()
            };

            // Store in main table first
            {
                // qjl_enabled_for_workspace logic here
                let qjl_enabled = {
                    let threshold = 1000; // Mock or get from config
                    let current_vectors: usize = conn.query_row(
                        "SELECT COUNT(*) FROM memory_embeddings WHERE workspace_id = ?",
                        params![record_c.workspace_id],
                        |row| row.get(0)
                    ).unwrap_or(0);
                    current_vectors >= threshold
                };

                let embedding_blob = if !record_c.embedding.is_empty() && qjl_enabled
                {
                    vector::serialize_embedding_qjl(&record_c.embedding)
                } else {
                    vector::serialize_embedding(&record_c.embedding)
                };

                conn.execute(
                    &format!(
                        "INSERT OR REPLACE INTO {} (id, workspace_id, path, content, metadata, embedding, created_at, updated_at, revision, primary_flag, parent_id, cluster_id, level, relation, revisions) VALUES (?1, ?2, ?3, ?4, ?5, ?6, ?7, ?8, ?9, ?10, ?11, ?12, ?13, ?14, ?15)",
                        TABLE_MEMORIES
                    ),
                    params![
                        record_c.id,
                        record_c.workspace_id,
                        record_c.path,
                        record_c.content,
                        serde_json::to_string(&record_c.metadata).unwrap_or_default(),
                        embedding_blob,
                        record_c.created_at.to_rfc3339(),
                        record_c.updated_at.to_rfc3339(),
                        record_c.revision,
                        record_c.primary as i32,
                        record_c.parent_id,
                        record_c.cluster_id,
                        record_c.level.as_str(),
                        serde_json::to_string(&record_c.relation).unwrap_or_default(),
                        serde_json::to_string(&record_c.revisions).unwrap_or_default(),
                    ],
                )?;

                // Sync to FTS5
                conn.execute(
                    "DELETE FROM memory_fts WHERE id = ?",
                    params![record_c.id],
                )?;
                let code_tokens =
                    super::fts::code_tokens(&format!("{} {}", &record_c.path, &record_c.content)).join(" ");
                conn.execute(
                    "INSERT INTO memory_fts(id, path, content, code_tokens) VALUES (?, ?, ?, ?)",
                    params![
                        record_c.id,
                        record_c.path,
                        record_c.content,
                        code_tokens
                    ],
                )?;

                graph::sync_memory_entities(conn, &record_c.workspace_id, &record_c)?;

                // Add to hash chain
                let chain_id = ulid::Ulid::new().to_string();
                conn.execute(
                    "INSERT INTO memory_chain (id, prev_hash, content_hash) VALUES (?, ?, ?)",
                    params![chain_id, prev_hash, content_hash],
                )?;

                store_clone.append_timeline_event(conn, &record_c.workspace_id, &record_c)?;
            }

            // Store vector in native vector search table
            if !record_c.embedding.is_empty() {                let embedding_json = serde_json::to_string(&record_c.embedding).unwrap_or_default();
                conn.execute(
                    "INSERT OR REPLACE INTO memory_embeddings(id, workspace_id, embedding) VALUES (?1, ?2, vector32(?3))",
                    params![record_c.id, record_c.workspace_id, embedding_json],
                )?;
            }

            Ok(())
        }).await
    }

@iberi22 iberi22 added jules Assigned to Google Jules and removed jules Assigned to Google Jules labels Jun 4, 2026
@iberi22 iberi22 marked this pull request as ready for review June 4, 2026 13:41
@iberi22 iberi22 merged commit c74aec5 into main Jun 4, 2026
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[refactor] Crear ConnectionManager como gateway unico para todas las conexiones SQLite

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