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Made the PNS gradient waveforms the same colour as in the PNS SAFE plot#353

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JosephGWoods wants to merge 5 commits into
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JosephGWoods:pns_plots
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Made the PNS gradient waveforms the same colour as in the PNS SAFE plot#353
JosephGWoods wants to merge 5 commits into
imr-framework:masterfrom
JosephGWoods:pns_plots

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github-actions Bot commented Jan 29, 2026

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Coverage

Coverage Report
FileStmtsMissCoverMissing
/home/runner/.local/lib/python3.12/site-packages/pypulseq
   add_gradients.py1376056%44, 52, 58, 61, 75–86, 92, 125–128, 135–136, 155, 162, 167–263
   add_ramps.py36360%1–92
   align.py35489%41, 45, 69, 73
   calc_duration.py25196%37
   calc_ramp.py2202162%48–359
   calc_rf_bandwidth.py372824%45–81, 85–89
   check_timing.py962970%78, 82, 107, 180, 199, 232, 239, 249–293
   compress_shape.py30197%28
   convert.py40880%42, 48, 66, 72–73, 82, 88–89
   event_lib.py961485%6–9, 48–51, 70–71, 205–210
   make_adc.py981486%77, 80, 90–94, 97, 146, 149, 153, 159, 163, 202, 204, 206, 214
   make_adiabatic_pulse.py1323970%204–208, 228–232, 240–241, 264, 270, 339–358, 462–471, 509–517
   make_arbitrary_grad.py531572%71, 74, 77, 80, 96–98, 107, 109, 117–121, 130
   make_arbitrary_rf.py756316%95–179
   make_block_pulse.py48394%121–125, 128
   make_delay.py9189%27
   make_digital_output_pulse.py16288%42, 50
   make_extended_trapezoid.py561279%67, 70, 76, 82, 85, 88, 91, 94, 116, 134, 136, 139
   make_extended_trapezoid_area.py93397%52, 227, 230
   make_gauss_pulse.py732073%139–143, 146–170, 177, 180
   make_label.py22482%64, 66, 68, 75
   make_sigpy_pulse.py1193075%12–13, 121, 124, 128, 165–169, 173, 176–177, 180–181, 196, 203, 208, 220, 223, 248–258, 272, 275, 305–315
   make_sinc_pulse.py701086%102, 108, 136–140, 144, 147–148, 151–152, 174
   make_soft_delay.py26292%107, 125
   make_trapezoid.py111794%177, 190, 196, 214, 232, 237, 255
   make_trigger.py16288%47, 55
   opts.py66986%78, 83, 102, 142, 166–170
   points_to_waveform.py9189%27
   rotate.py691480%15, 55, 66–69, 85–90, 112, 119–120
   scale_grad.py30197%65
   sigpy_pulse_opts.py26773%34–41
   split_gradient.py393121%46–103
   split_gradient_at.py702761%63–90, 110, 114, 118–120, 154–156
   traj_to_grad.py13931%26–40
/home/runner/.local/lib/python3.12/site-packages/pypulseq/SAR
   SAR_calc.py5180%9
/home/runner/.local/lib/python3.12/site-packages/pypulseq/Sequence
   block.py4697983%63, 66, 74, 80, 95, 103, 109, 120, 123, 126, 134, 139, 148, 159, 167, 207, 209, 213, 225, 274, 278, 294, 319–345, 382–385, 421–429, 436, 466–470, 512, 518, 551, 587–594, 611, 621, 647, 685, 703, 706, 724, 738, 765, 844, 881, 905
   calc_grad_spectrum.py81766%68–190
   calc_pns.py453620%45–101
   ext_test_report.py1671193%79, 156, 167–168, 337–343
   install.py754244%31, 52, 69, 71, 112–131, 148, 181–184, 200–212, 254–278
   parula.py4250%19–86
   read_seq.py4003990%44–45, 110, 117, 130, 133–134, 138, 184, 228, 401, 422–439, 502, 505, 590, 614, 654, 685, 701–705, 712, 823, 834
   sequence.py63312880%10–13, 105–115, 136–149, 196, 261–264, 311, 355, 431, 458–463, 500, 528–531, 622, 650–659, 671, 693, 734–737, 791, 829, 840–841, 847, 858, 864, 866, 874, 907–915, 1045, 1135, 1141, 1144, 1147, 1184, 1309–1322, 1380, 1402–1404, 1425, 1488, 1496, 1594, 1605–1618, 1687–1688, 1699–1717, 1741, 1771–1779, 1815, 1829–1839
   write_seq.py362798%45, 77–79, 313, 347–349, 499
/home/runner/.local/lib/python3.12/site-packages/pypulseq/utils
   cumsum.py14193%17
   paper_plot.py63588%47–130
   safe_pns_prediction.py12611310%50–87, 102–189, 197–214, 222, 244–250, 279–286, 310–336, 344–383, 396–411, 415
   seq_plot.py38919051%20, 98, 130–131, 150, 167–169, 174–216, 226–233, 240–305, 309–315, 319–327, 349, 351, 354, 379–401, 446–447, 450–453, 476–485, 497, 512–522, 531–533, 551–553, 555–556, 558–559, 592–604, 619–620, 636–653, 694–698
   tracing.py16662%33–34, 42, 54–55, 75
/home/runner/.local/lib/python3.12/site-packages/pypulseq/utils/siemens
   asc_to_hw.py58539%21–28, 48–106
   readasc.py59788%103–104, 110–111, 122–124
TOTAL5163157270% 

Tests Skipped Failures Errors Time
1469 24 💤 0 ❌ 0 🔥 4m 50s ⏱️

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2 participants