Update URLs, port defaults, and expand scheduler docs

docs/api/agents.md

@@ -27,4 +27,4 @@ AI agents currently interact with IOWarp through:
 
 - [CLIO Agent Overview](https://iowarp.ai/platform/clio-agent/) — Architecture and design
 - [CLIO Kit](https://docs.iowarp.ai) — Interactive MCP server showcase
-- [GitHub Issues](https://github.com/iowarp/iowarp/issues) — Request API features
+- [GitHub Issues](https://github.com/iowarp/clio-core/issues) — Request API features

docs/deployment/configuration.md

@@ -37,15 +37,15 @@ Size values throughout the file accept: `B`, `KB`, `MB`, `GB`, `TB` (case-insens
 
 | Parameter | Default | Description |
 |-----------|---------|-------------|
-| `port` | `5555` | ZeroMQ RPC listener port. Must match across all cluster nodes. |
+| `port` | `9413` | ZeroMQ RPC listener port. Must match across all cluster nodes. Can be overridden by `CHI_PORT` env var. |
 | `neighborhood_size` | `32` | Maximum nodes queried when splitting range queries. |
 | `hostfile` | *(none)* | Path to a file listing cluster node IPs/hostnames, one per line. Required for multi-node deployments. |
 | `wait_for_restart` | `30` | Seconds to wait for peer nodes during startup. |
 | `wait_for_restart_poll_period` | `1` | Seconds between connection retry attempts during startup. |
 
 ```yaml
 networking:
-  port: 5555
+  port: 9413
   neighborhood_size: 32
   # hostfile: /etc/iowarp/hostfile   # Multi-node only
   wait_for_restart: 30
@@ -261,7 +261,7 @@ All fields are optional and override compile-time defaults.
 
 ```yaml
 networking:
-  port: 5555
+  port: 9413
 
 runtime:
   num_threads: 4
@@ -291,7 +291,7 @@ compose:
 
 ```yaml
 networking:
-  port: 5555
+  port: 9413
 
 runtime:
   num_threads: 16
@@ -334,7 +334,7 @@ compose:
 
 ```yaml
 networking:
-  port: 5555
+  port: 9413
   neighborhood_size: 32
   hostfile: /etc/iowarp/hostfile
 
@@ -383,7 +383,7 @@ services:
     volumes:
       - ./chimaera.yaml:/home/iowarp/.chimaera/chimaera.yaml:ro
     ports:
-      - "5555:5555"
+      - "9413:9413"
     mem_limit: 8g
     command: ["chimaera", "runtime", "start"]
     restart: unless-stopped

docs/deployment/hpc-cluster.md

@@ -42,6 +42,13 @@ The following environment variables control runtime behavior. Set them before st
 export CHI_SERVER_CONF=/etc/iowarp/config.yaml
 ```
 
+### Networking Overrides
+
+| Variable | Default | Description |
+|----------|---------|-------------|
+| `CHI_PORT` | `9413` | Override the RPC port. Takes priority over the YAML `networking.port` setting. |
+| `CHI_SERVER_ADDR` | `127.0.0.1` | Override the server address that clients connect to. |
+
 ### IPC Transport Mode
 
 | Variable | Default | Description |
@@ -107,7 +114,7 @@ Reference it in your config:
 
 ```yaml
 networking:
-  port: 5555
+  port: 9413
   hostfile: /etc/iowarp/hostfile
 ```
 

docs/faq.md

@@ -19,7 +19,7 @@ IOWarp is released under the [BSD 3-Clause License](https://opensource.org/licen
 ### Where can I get help?
 
 - **Zulip Chat**: [iowarp.zulipchat.com](https://iowarp.zulipchat.com)
-- **GitHub Issues**: [github.com/iowarp/iowarp/issues](https://github.com/iowarp/iowarp/issues)
+- **GitHub Issues**: [github.com/iowarp/clio-core/issues](https://github.com/iowarp/clio-core/issues)
 - **Discussions**: [github.com/orgs/iowarp/discussions](https://github.com/orgs/iowarp/discussions)
 - **Email**: grc@illinoistech.edu
 

docs/getting-started/installation.mdx

@@ -19,8 +19,8 @@ This uses conda internally to manage dependencies and produces a full-featured
 build with all optional components.
 
 ```bash
-git clone --recurse-submodules https://github.com/iowarp/iowarp-core.git
-cd iowarp-core
+git clone --recurse-submodules https://github.com/iowarp/clio-core.git
+cd clio-core
 ./install.sh
 ```
 
@@ -73,7 +73,7 @@ docker pull iowarp/deploy-cpu:latest
 Run the container:
 
 ```bash
-docker run -d -p 5555:5555 --memory=8g --name iowarp iowarp/deploy-cpu:latest chimaera runtime start
+docker run -d -p 9413:9413 --memory=8g --name iowarp iowarp/deploy-cpu:latest chimaera runtime start
 ```
 
 ### Using Docker Compose
@@ -89,7 +89,7 @@ services:
     volumes:
       - ./chimaera.yaml:/home/iowarp/.chimaera/chimaera.yaml:ro
     ports:
-      - "5555:5555"
+      - "9413:9413"
     mem_limit: 8g
     command: ["chimaera", "runtime", "start"]
     restart: unless-stopped
@@ -120,8 +120,9 @@ echo ". ${PWD}/share/spack/setup-env.sh" >> ~/.bashrc
 2. Add the IOWarp repository:
 
 ```bash
-git clone https://github.com/iowarp/iowarp-install.git
-spack repo add iowarp-install/iowarp-spack
+git clone --recurse-submodules https://github.com/iowarp/clio-core.git
+cd clio-core
+spack repo add installers/spack
 ```
 
 3. Install IOWarp:

docs/getting-started/quick-start.mdx

@@ -74,7 +74,7 @@ The runtime resolves its configuration in this order:
 | 2 | `~/.chimaera/chimaera.yaml` |
 | 3 | Built-in defaults |
 
-The default configuration starts **4 worker threads** on **port 5555** and
+The default configuration starts **4 worker threads** on **port 9413** and
 composes three modules automatically:
 
 | Module | Purpose |
@@ -175,6 +175,8 @@ Done!
 |----------|-------------|
 | `CHI_SERVER_CONF` | Path to YAML configuration file (highest priority) |
 | `CHI_IPC_MODE` | Transport: `SHM` (shared memory), `TCP` (default), `IPC` (Unix socket) |
+| `CHI_PORT` | Override the RPC port (default: `9413`). Takes priority over YAML config. |
+| `CHI_SERVER_ADDR` | Override the server address clients connect to (default: `127.0.0.1`). |
 | `HSHM_LOG_LEVEL` | Logging verbosity: `debug`, `info`, `warning`, `error`, `fatal` |
 
 ## Next Steps
@@ -190,7 +192,7 @@ Done!
 
 ## Support
 
-- Open an issue on the [GitHub repository](https://github.com/iowarp/core)
+- Open an issue on the [GitHub repository](https://github.com/iowarp/clio-core)
 - Join the [Zulip Chat](https://iowarp.zulipchat.com)
 - Visit the [IOWarp website](https://iowarp.ai)
 - Email: grc@illinoistech.edu

docs/intro.md

@@ -44,6 +44,6 @@ IOWarp consists of three layers:
 ## Need Help?
 
 - **Community** — [Zulip Chat](https://iowarp.zulipchat.com)
-- **Bug Reports** — [GitHub Issues](https://github.com/iowarp/iowarp/issues)
+- **Bug Reports** — [GitHub Issues](https://github.com/iowarp/clio-core/issues)
 - **Feature Requests** — [GitHub Discussions](https://github.com/orgs/iowarp/discussions)
 - **Email** — grc@illinoistech.edu

docs/sdk/context-runtime/2.module_dev_guide.md

@@ -2407,7 +2407,7 @@ struct SerializableTask : public chi::Task {
 ```
 
 :::note GPU-Compatible Data Structures
-For GPU-compatible modules, HSHM provides shared-memory data structures (`hshm::string`, `hshm::ipc::vector`, `hshm::ipc::ring_buffer`) with cross-platform annotations. See the [Data Structures Guide](/docs/sdk/context-transport-primitives/types/data_structures_guide) for details.
+For GPU-compatible modules, HSHM provides shared-memory data structures (`hshm::string`, `hshm::ipc::vector`, `hshm::ipc::ring_buffer`) with cross-platform annotations. See the [Vector Guide](/docs/sdk/context-transport-primitives/types/vector_guide), [Ring Buffer Guide](/docs/sdk/context-transport-primitives/types/ring_buffer_guide), and [String Guide](/docs/sdk/context-transport-primitives/types/string_guide) for details.
 :::
 
 ### Bulk Transfer Support with ar.bulk

docs/sdk/context-runtime/3.module_test_guide.md

@@ -33,7 +33,7 @@ A minimal test configuration:
 
 ```yaml
 networking:
-  port: 5555
+  port: 9413
 
 runtime:
   num_threads: 4
@@ -181,7 +181,7 @@ std::string CreateComposeConfig() {
     << "  num_threads: 4\n"
     << "\n"
     << "networking:\n"
-    << "  port: 5555\n"
+    << "  port: 9413\n"
     << "\n"
     << "compose:\n"
     << "- mod_name: chimaera_bdev\n"
@@ -405,7 +405,7 @@ ctest -R my_module
    rm -f /dev/shm/chimaera_*
    ```
 
-6. **Kill stale processes on port conflicts**: Tests bind to port 5555. If a previous run left a zombie:
+6. **Kill stale processes on port conflicts**: Tests bind to port 9413. If a previous run left a zombie:
    ```bash
-   sudo kill -9 $(sudo lsof -t -i :5555) 2>/dev/null
+   sudo kill -9 $(sudo lsof -t -i :9413) 2>/dev/null
    ```