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Popular repositories Loading

  1. TRM_project TRM_project Public

    scRNA-seq analysis of tissue-resident memory T cells (TRM): Scanpy pipeline, pySCENIC GRN inference, basin stability modeling, and Cell Systems manuscript

    Jupyter Notebook

  2. SICAI-psoriasis SICAI-psoriasis Public

    SICAI: Stromal-Immune Coupled Attractor Index for spatial transcriptomics. Code for Nature Communications manuscript.

    Python

  3. IPA-kill-experiment IPA-kill-experiment Public

    Code and results for "Intercellular communication buffers genetic perturbations to signaling genes: evidence from a cross-context eQTL comparison"

    Python

  4. DGSA-stability DGSA-stability Public

    Decomposable Geometric Stability Analysis for cell state maintenance — simulation code for Bioinformatics submission

    Python

  5. STRATA STRATA Public

    Spatial Transcription-factor Regulatory Architecture — field-theoretic analysis of regulon activity fields on spatial transcriptomics data

    Jupyter Notebook

  6. STRATA-Atlas STRATA-Atlas Public

    STRATA-Atlas: Spatial Regulon Field Theory analysis of transcription factor regulatory architecture in psoriasis

    Python