Implement Adjoint for custom meshes#63

Draft

sabakhshi wants to merge 50 commits intojoanibal:mainfrom

sabakhshi:bakhshi_patch7

Commits on Oct 15, 2025

Add mesh output to OM reader
sabakhshi
committed

Commits on Oct 24, 2025

Initial commit of direct mesh setting
sabakhshi
committed

Commits on Oct 27, 2025

Implemented python interface and setting basic meshes works
sabakhshi
committed

Commits on Oct 29, 2025

Fixed multiple surfaces not being handled correct with custom meshes. fixed scale and translate of custom meshes not working
sabakhshi
committed

Commits on Oct 30, 2025

Commits on Oct 31, 2025

hacked in a way to update surfaces without store or allocating anything in common block
sabakhshi
committed

Commits on Nov 4, 2025

WIP rework
sabakhshi
committed
Wip stuff
sabakhshi
committed

Commits on Nov 5, 2025

Wip
sabakhshi
committed

Commits on Nov 17, 2025

Finally finished the flat index rework for direct mesh
sabakhshi
committed

Commits on Nov 19, 2025

Implement flat mesh setting in python layer initialization. fix some fortran layer indexing bugs. runtime mesh updating still needs to be implemented
sabakhshi
committed

Commits on Nov 21, 2025

Implement new normal calcs for custom meshes
sabakhshi
committed

Commits on Dec 16, 2025

Implemented mesh flattening
sabakhshi
committed

Commits on Jan 12, 2026

start cleaning up for PR
sabakhshi
committed

Commits on Jan 13, 2026

integrated encalc routine for custom meshes into the main one
sabakhshi
committed

Commits on Jan 16, 2026

Added plotting features
sabakhshi
committed

Commits on Feb 2, 2026

Commits on Feb 3, 2026

Commits on Feb 5, 2026

Fixed multiple mesh surfaces not working correctly
sabakhshi
committed

Commits on Feb 6, 2026

formatting of fortran code and removed one batch of commented prints
joanibal
committed

Commits on Feb 8, 2026

fixed EC_G for custom meshes
sabakhshi
committed

Commits on Feb 9, 2026

Commits on Feb 10, 2026

Commits on Feb 17, 2026

Implemented adjoint. reverse still seg faulting for now with unmodfied aoper_b.f
sabakhshi
committed

Commits on Feb 23, 2026

Commits on Feb 24, 2026