Refseq annotation #71
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| import argparse | ||
| import json | ||
| from pathlib import Path | ||
| from typing import Optional |
| if os.path.exists(tmp_path): | ||
| try: | ||
| os.remove(tmp_path) | ||
| except Exception: |
| @@ -0,0 +1,734 @@ | |||
| import json | |||
| from pathlib import Path | |||
Comment on lines
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| if identifier.startswith("GCF_"): | ||
| return f"insdc.gcf:{identifier}" |
Collaborator
There was a problem hiding this comment.
let's also add in
if identifier.startswith("GCA_"):
return f"insdc.gca:{identifier}"| @@ -0,0 +1,710 @@ | |||
| import json | |||
Collaborator
There was a problem hiding this comment.
Before you start doing any refactoring, can you add in an integration test that checks the results of parsing the JSON data into all 8 CDM tables? Let me know when you have done that so I can take a look.
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