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when colnames(L) get named in case they are NULL with colnames(Y) <- paste0("gene_", letters[seq_len(ncol(Y))]) wouldn't that give gene_NA if there are more than 26 genes?

Status: Open.

#16 In kieranrcampbell/clonealign;

· kieranrcampbell opened on Feb 17, 2021

the inference runs through one ELBO computation and throws an error (below) if rownames(L) and colnames(Y) don't match or are both NULL.

Status: Open.

#15 In kieranrcampbell/clonealign;

· kieranrcampbell opened on Feb 17, 2021

delta-CN and delta-RNA

Status: Open.

#14 In kieranrcampbell/clonealign;

· gianasco opened on Mar 24, 2020

size_factors parameter

Status: Open.

#13 In kieranrcampbell/clonealign;

· gianasco opened on Mar 23, 2020

module 'tensorflow' has no attribute 'reset_default_graph'

Status: Open.

#12 In kieranrcampbell/clonealign;

· skatragadda-nygc opened on Jan 28, 2020

Performance with multinomial likelihood

Status: Open.

#11 In kieranrcampbell/clonealign;

· pedrofale opened on Sep 10, 2019

Handle situation when copy number is 0

Status: Open.

#1 In kieranrcampbell/clonealign;

· kieranrcampbell opened on Jan 24, 2018