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  1. PhagePleats PhagePleats Public

    Taxonomic classification of dsDNA phages using structural protein profiles. PhagePleats predicts taxonomic ranks and highlights novel genomes via similarity-based analysis.

    Python 2

  2. Structural_Taxonomy_Caudoviricetes Structural_Taxonomy_Caudoviricetes Public

    Jupyter Notebook

  3. crassify crassify Public

    Pipeline to taxonomically classify viral metagenome data.

    Python

  4. Irish_Soil_Virome Irish_Soil_Virome Public

    Code supporting the metagenomic analysis of the Irish soil virome

    Jupyter Notebook

  5. microsnp microsnp Public

    A bcftools pipeline to find SNPs for known microbial species in a metagenomic dataset.

    Python