perf: cap PyTorch threads, bump fix_illumination forks, skip intermediate pyramids#113
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perf: cap PyTorch threads, bump fix_illumination forks, skip intermediate pyramids#113FIrgolitsch wants to merge 3 commits intopr-m-gpu-kvikiofrom
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PR — Pipeline performance tuning
Three measurement-driven perf improvements to the
reconst_3dNextflow pipeline:fix_illuminationthread cap.linum_fix_illumination_3d.pynow callsconfigure_all_libraries()to cap PyTorch threads, preventing oversubscription when running multiple forks.fix_illuminationmaxForks 1 → 4. Measured: BaSiCPy/PyTorch uses ~374 MiB per fork; 4 forks ≈ 1.5 GB, well under per-GPU capacity.--n_levels 0on intermediate steps avoids wasted multiscale generation that's only needed on final outputs.