Adding old code from our gitlab#15
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Bumps [pillow](https://github.com/python-pillow/Pillow) from 9.1.0 to 9.1.1. - [Release notes](https://github.com/python-pillow/Pillow/releases) - [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst) - [Commits](python-pillow/Pillow@9.1.0...9.1.1) --- updated-dependencies: - dependency-name: pillow dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com>
and apply the PIR to RAS transformation
Adding a script to download the allen mouse brain template
Bump pillow from 9.1.0 to 9.1.1
Feature setup refactor
Develop refactor allen download
New feature : OCT binary converter
Removing the allensdk dependency (fixing issue #2)
…_to_nii, linum_create_mosaic_grid and linum_crop_tiles with their dependencies
Added skimage and tables to requirements.txt, added linum_convert_oct…
…o nifty conversion algorithm + a realignment algorithm + the nextflow scripts for the reconstruction
Added the missing python algorithms for the reconstruction + a tiff t…
…ssary on Calcul Canada
Workflows
Added a nifti to zarr conversion
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What's the status on this? Is there any point still doing this or is everything already included these days? |
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